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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtttctatatcttttattactttttttgttgacttttgttctgatattataattcattaatttctaacattcattgttcatgtttctttggatgcagAAATCTTGCTAATAATAATTTCAATGGGGCAATCCCTTATTCCCTTTCTGAAAAGACTTCGCTTGTAATCCT

Basic information

species Glycine max
transcript GLYMA16G01790.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213603704|gb|DB956269.1|DB956269
EST:     AATATTGGTGGCACCATACCATACCAACTTCCTCCTAATCTGCAGTACTT                         AAATCTTGCTAATAATAATTTCAATGGGGCAATCCCTTATTCCCTTTCTGA
genomic: AATATTGGTGGCACCATACCATACCAACTTCCTCCTAATCTGCAGTACTTgtatgtttct ... ttggatgcagAAATCTTGCTAATAATAATTTCAATGGGGCAATCCCTTATTCCCTTTCTGA
EST: gi|192296122|gb|FG989482.1|FG989482
EST:     AATATTGGTGGCACCATACCATACCAACTTCCTCCTAATCTGCAGTACTT                         AAATCTTGCTAATAATAATTTCAATGGGGCAATCCCTTATTCCCTTTCTGA
genomic: AATATTGGTGGCACCATACCATACCAACTTCCTCCTAATCTGCAGTACTTgtatgtttct ... ttggatgcagAAATCTTGCTAATAATAATTTCAATGGGGCAATCCCTTATTCCCTTTCTGA
EST: gi|213603106|gb|DB960411.1|DB960411
EST:     AATATTGGTGGCACCATACCATACCAACTTCCTCCTAATCTGCAGTACTT                         AAATCTTGCTAATAATAATTTCAATGGGGCAATCCCTTATTCCCTTTCTGA
genomic: AATATTGGTGGCACCATACCATACCAACTTCCTCCTAATCTGCAGTACTTgtatgtttct ... ttggatgcagAAATCTTGCTAATAATAATTTCAATGGGGCAATCCCTTATTCCCTTTCTGA
EST: gi|209708087|gb|BW671103.1|BW671103
EST:     AATATTGGTGGCACCATACCATACCAACTTCCTCCTAATCTGCAGTACTT                         AAATCTTGCTA
genomic: AATATTGGTGGCACCATACCATACCAACTTCCTCCTAATCTGCAGTACTTgtatgtttct ... ttggatgcagAAATCTTGCTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gatattataattcattaatttctaacattcattgttcatgtttctttggatgcagAAATCTTGCTAATAATAATTTCAATGGGGCAATCCCTTATTCCCTTTCTGAAAAGACTTCGCTTGTAATCCT
                   ttctaac  putative branch site (score: 1)
                                      tgtttcttt  putative PPT
     tataattcattaattt  TA-rich tract