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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aaatgttgcagagaatatgtgcttgctttgcagtgttaattaatttatcatgtttggaactgctttatgttttgtttttgaatataagtttctcttgcagTTGCAGAAGGAGATTGGGGTGAAGCTGTTCCACCACCACAACAAATCCCTGTTCCTCCCTCTGGAATTGACTCTGTCCAACCAACTGGCTGGGAATAAAC

Basic information

species Glycine max
transcript GLYMA16G01460.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207788977|gb|GD760325.1|GD760325
EST:     AGCAGCACCTGGTGTCAACTGGGGGGCACCTGCAGAAGCACCTGCTGCTG                         TTGCAGAAGGAGATTGGGGTGAAGCTGTTCCACCACCACAACAAATCCCTG
genomic: AGCAGCACCTGGTGTCAACTGGGGGGCACCTGCAGAAGCACCTGCTGCTGgtatgtgatt ... tctcttgcagTTGCAGAAGGAGATTGGGGTGAAGCTGTTCCACCACCACAACAAATCCCTG
EST: gi|31461887|gb|CD403915.1|CD403915
EST:     AGCAGCACCTGGTGTCAACTGGGGGGCACCTGCAGAAGCACCTGCTGCTG                         TTGCAGAAGGAGATTGGGGTGAAGCTGTTCCACCACCACAACAAATCCCTG
genomic: AGCAGCACCTGGTGTCAACTGGGGGGCACCTGCAGAAGCACCTGCTGCTGgtatgtgatt ... tctcttgcagTTGCAGAAGGAGATTGGGGTGAAGCTGTTCCACCACCACAACAAATCCCTG
EST: gi|193601738|gb|FK554767.1|FK554767
EST:     AGCAGCACCTGGTGTCAACTGGGGGGCACCTGCAGAAGCACCTGCTGCTG                         TTGCAGAAGGAGATTGGGGTGAAGCTGTTCCACCACCAC
genomic: AGCAGCACCTGGTGTCAACTGGGGGGCACCTGCAGAAGCACCTGCTGCTGgtatgtgatt ... tctcttgcagTTGCAGAAGGAGATTGGGGTGAAGCTGTTCCACCACCAC
EST: gi|193340756|gb|FK308713.1|FK308713
EST:     AGCAGCACCTGGTGTCAACTGGGGGGCACCTGCAGAAGCACCTGCTGCTG                         TTGCAGAAGGAGATTGGGGTGAAGCTGTTCCACCACCACAACAAATCCCTG
genomic: AGCAGCACCTGGTGTCAACTGGGGGGCACCTGCAGAAGCACCTGCTGCTGgtatgtgatt ... tctcttgcagTTGCAGAAGGAGATTGGGGTGAAGCTGTTCCACCACCACAACAAATCCCTG
EST: gi|208202557|gb|GD994876.1|GD994876
EST:     AGCAGCACCTGGTGTCAACTGGGGGGCACCTGCAGAAGCACCTGCTGCTG                         TTGCAGAAGGAGATTGGGGTGAAGCTGTTCCACCACCACAACAAATCCCTG
genomic: AGCAGCACCTGGTGTCAACTGGGGGGCACCTGCAGAAGCACCTGCTGCTGgtatgtgatt ... tctcttgcagTTGCAGAAGGAGATTGGGGTGAAGCTGTTCCACCACCACAACAAATCCCTG
EST: gi|208258803|gb|GE054228.1|GE054228
EST:     AGCAGCACCTGGTGTCAACTGGGGGGCACCTGCAGAAGCACCTGCTGCTG                         TTGCAGAAGGAGATTGGGGTGAAGCTGTTCCACCACCACAACAAATCCCTG
genomic: AGCAGCACCTGGTGTCAACTGGGGGGCACCTGCAGAAGCACCTGCTGCTGgtatgtgatt ... tctcttgcagTTGCAGAAGGAGATTGGGGTGAAGCTGTTCCACCACCACAACAAATCCCTG
EST: gi|208252244|gb|GE049364.1|GE049364
EST:     AGCAGCACCTGGTGTCAACTGGGGGGCACCTGCAGAAGCACCTGCTGCTG                         TTGCAGAAGGAGATTGGGGTGAAGCTGTTCCACCACCACAACAAATCCCTG
genomic: AGCAGCACCTGGTGTCAACTGGGGGGCACCTGCAGAAGCACCTGCTGCTGgtatgtgatt ... tctcttgcagTTGCAGAAGGAGATTGGGGTGAAGCTGTTCCACCACCACAACAAATCCCTG
EST: gi|208081982|gb|GD883390.1|GD883390
EST:     AGCAGCACCTGGTGTCAACTGGGGGGCACCTGCAGAAGCACCTGCTGCTG                         TTGCAGAAGGAGATTGGGGTGAAGCTGTTCCACCACCACAACAAAT
genomic: AGCAGCACCTGGTGTCAACTGGGGGGCACCTGCAGAAGCACCTGCTGCTGgtatgtgatt ... tctcttgcagTTGCAGAAGGAGATTGGGGTGAAGCTGTTCCACCACCACAACAAAT
EST: gi|15662099|gb|BI699470.1|BI699470
EST:     AGCAGCACCTGGTGTCAACTGGGGGGCACCTGCAGAAGCACCTGCTGCTG                         TTGCAGAAGGAGATTGGGGTGAAGCTGTTCCACCACCACAACAAATCCCTG
genomic: AGCAGCACCTGGTGTCAACTGGGGGGCACCTGCAGAAGCACCTGCTGCTGgtatgtgatt ... tctcttgcagTTGCAGAAGGAGATTGGGGTGAAGCTGTTCCACCACCACAACAAATCCCTG
EST: gi|151409225|gb|EV279033.1|EV279033
EST:     AGCAGCACCTGGTGTCAACTGGGGGGCACCTGCAGAAGCACCTGCTGCTG                         TTGCAGAAGGAGATTGGGGTGAAGCTGTTCCACCACCACAACAAATCCCTG
genomic: AGCAGCACCTGGTGTCAACTGGGGGGCACCTGCAGAAGCACCTGCTGCTGgtatgtgatt ... tctcttgcagTTGCAGAAGGAGATTGGGGTGAAGCTGTTCCACCACCACAACAAATCCCTG
EST: gi|208114213|gb|GD909416.1|GD909416
EST:     ACCTGCTGCTG                         TTGCAGAAGGAGATTGGGGTGAAGCTGTTCCACCACCACAACAAATCCCTG
genomic: ACCTGCTGCTGgtatgtgatt ... tctcttgcagTTGCAGAAGGAGATTGGGGTGAAGCTGTTCCACCACCACAACAAATCCCTG
EST: gi|213604083|gb|DB974209.1|DB974209
EST:     AGCAGCACCTGGTGTCAACTGGGGGGCACCTGCAGAAGCACCTGCTGCTG                         TTGCAGAAGGAGATTGGGGTGAAGCTGTTCCACCACCACAACAAATCCCTG
genomic: AGCAGCACCTGGTGTCAACTGGGGGGCACCTGCAGAAGCACCTGCTGCTGgtatgtgatt ... tctcttgcagTTGCAGAAGGAGATTGGGGTGAAGCTGTTCCACCACCACAACAAATCCCTG
EST: gi|193681635|gb|FK620809.1|FK620809
EST:     GGCACCTGCAGAAGCACCTGCTGCTG                         TTGCAGAAGGAGATTGGGGTGAAGCTGTTCCACCACCACAACAAATCCCTG
genomic: GGCACCTGCAGAAGCACCTGCTGCTGgtatgtgatt ... tctcttgcagTTGCAGAAGGAGATTGGGGTGAAGCTGTTCCACCACCACAACAAATCCCTG
EST: gi|193460111|gb|FK427062.1|FK427062
EST:     AGCAGCACCTGGTGTCAACTGGGGGGCACCTGCAGAAGCACCTGCTGCTG                         TTGCAGAAGGA
genomic: AGCAGCACCTGGTGTCAACTGGGGGGCACCTGCAGAAGCACCTGCTGCTGgtatgtgatt ... tctcttgcagTTGCAGAAGGA
EST: gi|193547677|gb|FK504622.1|FK504622
EST:     AGCAGCACCTGGTGTCAACTGGGGGGCACCTGCAGAAGCACCTGCTGCTG                         TTGCAGAAGGAGATTGGGGTGAAGCTGTTCCACC
genomic: AGCAGCACCTGGTGTCAACTGGGGGGCACCTGCAGAAGCACCTGCTGCTGgtatgtgatt ... tctcttgcagTTGCAGAAGGAGATTGGGGTGAAGCTGTTCCACC
EST: gi|193356764|gb|FK318868.1|FK318868
EST:     AGCAGCACCTAGTGTCAACTGGGGGGCACCTGCAGAAGCACCTGCTGCTG                         TTGCAGAAGGAGATTGGGGTGAAGCTGTTCCACCACCACAACAAATCCCTG
genomic: AGCAGCACCTGGTGTCAACTGGGGGGCACCTGCAGAAGCACCTGCTGCTGgtatgtgatt ... tctcttgcagTTGCAGAAGGAGATTGGGGTGAAGCTGTTCCACCACCACAACAAATCCCTG
EST: gi|193350366|gb|FK317454.1|FK317454
EST:     AGCAGCACCTGGTGTCAACTGGGGGGCACCTGCAGAAGCACCTGCTGCTG                         TTGCAGAAGGAGATTGGGGTGAAGCTGTTCCACCACCACAACAAATCCCTG
genomic: AGCAGCACCTGGTGTCAACTGGGGGGCACCTGCAGAAGCACCTGCTGCTGgtatgtgatt ... tctcttgcagTTGCAGAAGGAGATTGGGGTGAAGCTGTTCCACCACCACAACAAATCCCTG
EST: gi|193672227|gb|FK618023.1|FK618023
EST:     AGCAGCACCTGGTGTCAACTGGGGGGCACCTGCAGAAGCACCTGCTGCTG                         TTGCAGAAGGAGATTGGGGTGAAGCTGTTCCACCACCACAACAAATCCCTG
genomic: AGCAGCACCTGGTGTCAACTGGGGGGCACCTGCAGAAGCACCTGCTGCTGgtatgtgatt ... tctcttgcagTTGCAGAAGGAGATTGGGGTGAAGCTGTTCCACCACCACAACAAATCCCTG
EST: gi|193556497|gb|FK511146.1|FK511146
EST:     AGCAGCACCTGGTGTCAACTGGGGGGCACCTGCAGAAGCACCTGCTGCTG                         TTGCAGAAGGAGATTGGGGTGAAGCTGTTCCACCACCACAACAAATCCCTG
genomic: AGCAGCACCTGGTGTCAACTGGGGGGCACCTGCAGAAGCACCTGCTGCTGgtatgtgatt ... tctcttgcagTTGCAGAAGGAGATTGGGGTGAAGCTGTTCCACCACCACAACAAATCCCTG
EST: gi|207688856|gb|GD671795.1|GD671795
EST:     AGCAGCACCTGGTGTCAACTGGGGGGCACCTGCAGAAGCACCTGCTGCTG                         TTGCAGAAGGAGATTGGGGTGAAGCTGTTCCACCACCACAACAAATCCCTG
genomic: AGCAGCACCTGGTGTCAACTGGGGGGCACCTGCAGAAGCACCTGCTGCTGgtatgtgatt ... tctcttgcagTTGCAGAAGGAGATTGGGGTGAAGCTGTTCCACCACCACAACAAATCCCTG
EST: gi|208247323|gb|GE045761.1|GE045761
EST:     CAGCCACCTGGTGTCAACGTGGGGGGCACCTGCAGAAGCACCTGCTGCTG                         TTGCAGAAGGAGATTGGGGTGAAGCTGTTCCACCACCACAACAAATCCCTG
genomic: CAG-CACCTGGTGTCAAC-TGGGGGGCACCTGCAGAAGCACCTGCTGCTGgtatgtgatt ... tctcttgcagTTGCAGAAGGAGATTGGGGTGAAGCTGTTCCACCACCACAACAAATCCCTG
EST: gi|193713131|gb|FK651064.1|FK651064
EST:     GCAGCACCTGGTGTCAACGTGGGGGGCACCTGCAGAAGCACCTGCTGCTG                         TTGCAGAAGGAGAGTTGGGGTGAAGCTGTT
genomic: GCAGCACCTGGTGTCAAC-TGGGGGGCACCTGCAGAAGCACCTGCTGCTGgtatgtgatt ... tctcttgcagTTGCAGAAGGAGA-TTGGGGTGAAGCTGTT
EST: gi|208051021|gb|GD844634.1|GD844634
EST:     AGCAGCACCTGGTGTCAACTGGGGGGCACCTGCAGAAGCACCTGCTGCTG                         TTGCAGAAGGAGATTGGGGTGAAGCTGTTCCACCACCACAACAAATCCCTG
genomic: AGCAGCACCTGGTGTCAACTGGGGGGCACCTGCAGAAGCACCTGCTGCTGgtatgtgatt ... tctcttgcagTTGCAGAAGGAGATTGGGGTGAAGCTGTTCCACCACCACAACAAATCCCTG
EST: gi|193679326|gb|FK619746.1|FK619746
EST:     AGCAGCACCTGGTGTCAACTGGGGGGCACCTGCAGAAGCACCTGCTGCTG                         TTGCAGAAGGAGATTGGGGTGAAGCTGTTCCACCACCACAA
genomic: AGCAGCACCTGGTGTCAACTGGGGGGCACCTGCAGAAGCACCTGCTGCTGgtatgtgatt ... tctcttgcagTTGCAGAAGGAGATTGGGGTGAAGCTGTTCCACCACCACAA
EST: gi|23727440|gb|BU761750.1|BU761750
EST:     AGCAGCACCTGGTGTCAACTGGGGGGCACCTGCAGAAGCACCTGCTGCTG                         TTGCAGAAGGAGATTGGGGTGAAGCTGTTCCACCACCACAACAAATCCCTG
genomic: AGCAGCACCTGGTGTCAACTGGGGGGCACCTGCAGAAGCACCTGCTGCTGgtatgtgatt ... tctcttgcagTTGCAGAAGGAGATTGGGGTGAAGCTGTTCCACCACCACAACAAATCCCTG
EST: gi|193567352|gb|FK524725.1|FK524725
EST:     AGCAGCACCTGGTGTCAACTGGGGGGCACCTGCAGAAGCACCTGCTGCTG                         TTGCAGAAGGAGATTGGGGTGAAGCTGTTCCACCACCACAACAA-TCCCTG
genomic: AGCAGCACCTGGTGTCAACTGGGGGGCACCTGCAGAAGCACCTGCTGCTGgtatgtgatt ... tctcttgcagTTGCAGAAGGAGATTGGGGTGAAGCTGTTCCACCACCACAACAAATCCCTG
EST: gi|16348783|gb|BI974378.1|BI974378
EST:     AGCAGCACCTGGTGTCAACTGGGGGGCACCTGCAGAAGCACCTGCTGCTG                         TTGCAGAAGGAGATTGGGGTGAAGCTGTTCCACCACCACAACAAATCCCTG
genomic: AGCAGCACCTGGTGTCAACTGGGGGGCACCTGCAGAAGCACCTGCTGCTGgtatgtgatt ... tctcttgcagTTGCAGAAGGAGATTGGGGTGAAGCTGTTCCACCACCACAACAAATCCCTG
EST: gi|193540974|gb|FK493980.1|FK493980
EST:     AGCAGCACCTGGTGTCAACTGGGGGGCACCTGCAGAAGCACCTGCTGCTG                         TTGCAGGAGGAGATTGGGGTGAAGCTGTTCCACCACCACAACAAATCCCTG
genomic: AGCAGCACCTGGTGTCAACTGGGGGGCACCTGCAGAAGCACCTGCTGCTGgtatgtgatt ... tctcttgcagTTGCAGAAGGAGATTGGGGTGAAGCTGTTCCACCACCACAACAAATCCCTG
EST: gi|208037384|gb|GD836195.1|GD836195
EST:     AGCAGCACCTGGTGTCAACTGGGGGGCACCTGCAGAAGCACCTGCTGCTG                         TTGCAGAAGGAGATTGGGGTGAAGCTGTTCCACCACCACAACAAATCCCTG
genomic: AGCAGCACCTGGTGTCAACTGGGGGGCACCTGCAGAAGCACCTGCTGCTGgtatgtgatt ... tctcttgcagTTGCAGAAGGAGATTGGGGTGAAGCTGTTCCACCACCACAACAAATCCCTG
EST: gi|11687966|gb|BF595642.1|BF595642
EST:     AGCAGCACCTGGTGTCAACTGGGGGGCACCTGCAGAAGCACCTGCTGCTG                         TTGCAGAAGGAGATTGGGGTGAAGCTGGTCCACCACCACCACAGATCCCTG
genomic: AGCAGCACCTGGTGTCAACTGGGGGGCACCTGCAGAAGCACCTGCTGCTGgtatgtgatt ... tctcttgcagTTGCAGAAGGAGATTGGGGTGAAGCTGTTCCACCACCACAACAAATCCCTG
EST: gi|193731031|gb|FK663205.1|FK663205
EST:     GCAGAAGCACCTGCTGCTG                         TTGCAGGAGGAGATTGGGGTGAAGCTGTTCCACCACCACAACAAATCCCTG
genomic: GCAGAAGCACCTGCTGCTGgtatgtgatt ... tctcttgcagTTGCAGAAGGAGATTGGGGTGAAGCTGTTCCACCACCACAACAAATCCCTG
EST: gi|207741168|gb|GD715344.1|GD715344
EST:     AGCAGCACCTGGTGTCGACTGGGGGGCACCTGCAGAAGCACCTGCTGCTG                         TTGCAGAAGGAGATTGGGGTGAAGCTGTTCCACCACCACAACAAATCCCTG
genomic: AGCAGCACCTGGTGTCAACTGGGGGGCACCTGCAGAAGCACCTGCTGCTGgtatgtgatt ... tctcttgcagTTGCAGAAGGAGATTGGGGTGAAGCTGTTCCACCACCACAACAAATCCCTG
EST: gi|18039449|gb|BM307743.1|BM307743
EST:     AGCAGCACCTGGTGTCAACTGGGGGGCACCTGCAGAAGCACCTGCTGCTG                         TTGCAGAAGGAGATTGGGGTGAAGCTGTTCCACCACCACAACAAATCCCTG
genomic: AGCAGCACCTGGTGTCAACTGGGGGGCACCTGCAGAAGCACCTGCTGCTGgtatgtgatt ... tctcttgcagTTGCAGAAGGAGATTGGGGTGAAGCTGTTCCACCACCACAACAAATCCCTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatcatgtttggaactgctttatgttttgtttttgaatataagtttctcttgcagTTGCAGAAGGAGATTGGGGTGAAGCTGTTCCACCACCACAACAAATCCCTGTTCCTCCCTCTGGAATTGACTCTGTCCAACCAACTGGCTGGGAATAAAC
                                           tttctcttgc  CT-rich tract
                  tttatgttttgttttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
aaatgttgcagagaatatgtgcttgctttgcagtgttaattaatttatcatgtttggaactgctttatgttttgtttttgaatataagtttctcttgcagTTGCAGAAGGAGATTGGGGTGAAGCTGTTCCACCACCACAACAAATCCCTGTTCCTCCCTCTGGAATTGACTCTGTCCAACCAACTGGCTGGGAATAAAC

- -tgttgca
- - - - - - - - - - gcttgct
- - - - - - - - - - - - - - tgcagtg
- - - - - - - - - - - - - - - - - - - - - - - -tcatgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - actgctt