Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagtcatgttcctacttgatatatcagtgtctgtaatcaataggtattgtattgaacaactaaccaacaacataatcttttttctgcagCATTTCTCTTTTATGCAGCTATGGTTATAACAGCTACTTTTATCCTTATCTTCCACTTCATTCCTCTCTATGGCCAGACACACATAATGGTTTATATTGG

Basic information

species Glycine max
transcript GLYMA16G00560.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G00560.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv12s0035g00720.t01 (Vitis vinifera), 3'ss of exon 4
-------------------------gtagtcatgttcctacttgatatatcagtgtctgtaatcaataggtattgtattgaacaactaacc-aacaacataatcttttttc----------tgcagCATTTCTCTTTTATGCAGCTATGGTTATAACAGCTACTTTTATCCTTATCTTCCACTTCATTCCTCTCTATGGCCAGACACACATAATGGTTTATATTGG
                          |     | ||| |   ||  |||| | | ||  | ||  |    |||| |||  |  |     |   |  || | |  || |||           |||||| |||||||||||||||||  |||| |||||||||   ||| | |||||  |||||||||| || |  ||||||||||| || ||||||||||| |||||
gtaatataagccttggttatccattatttcattcttcatctatgtcatataattttcacttatttacttatattttatatatgattgggcttgatgactttactttcttttacttgttccatgcagCTTTTCTCTTTTATGCAGCCTTGGTGATAACAGCTGTGTTTGTACTTATAATCCACTTCATCCCACAATATGGCCAGACCCATATAATGGTTTACATTGG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|38193345|gb|CF922551.1|CF922551
EST:     ACGGGAAATTGAATCTGTTTCAGAGGTGTGGGATCTTGCTATGGAACCAG                         CATTTCTCTTTTATGCAGCTATGGTTATAACAGCTACTTTTATCCTTATCT
genomic: ACGGGAAATTGAATCTGTTTCAGAAGTGTGGGATCTTGCTATGGAACCAGgtagtcatgt ... ttttctgcagCATTTCTCTTTTATGCAGCTATGGTTATAACAGCTACTTTTATCCTTATCT
EST: gi|120530522|gb|EH258655.1|EH258655
EST:     ACGGGAAATTGAATCTGTTTCAGAAGTGTGGGATCTTGCTATGGAACCAG                         CATTTCTCTTTTATGCAGCTATGGTTATAACAGCTACTTTTATCCTTATCT
genomic: ACGGGAAATTGAATCTGTTTCAGAAGTGTGGGATCTTGCTATGGAACCAGgtagtcatgt ... ttttctgcagCATTTCTCTTTTATGCAGCTATGGTTATAACAGCTACTTTTATCCTTATCT
EST: gi|120531881|gb|EH260014.1|EH260014
EST:     TCTTGCTATGGAACCAG                         CA-TTCTC--TTATGCAGCTATGGTTATAACAGCTAC-TTTATCCTTATCT
genomic: TCTTGCTATGGAACCAGgtagtcatgt ... ttttctgcagCATTTCTCTTTTATGCAGCTATGGTTATAACAGCTACTTTTATCCTTATCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatcaataggtattgtattgaacaactaaccaacaacataatcttttttctgcagCATTTCTCTTTTATGCAGCTATGGTTATAACAGCTACTTTTATCCTTATCTTCCACTTCATTCCTCTCTATGGCCAGACACACATAATGGTTTATATTGG
                       aactaac  putative branch site (score: 1)
                                         tcttttttctgc  putative PPT
                                  aacataatctttttt  TA-rich tract