Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagcaaaattgctatttttatttgcatacatcctatctaaataacatttcctttcggtatttgtctataacaattgtccattatgcagATAAACCACCGATTGAAGAGCTCCACCAATTCTTGGAATTCCAGCTGCCAAGGCAGTGGGCACCTGTATTCAGTGACCTTCCTCTTGGTCCACAACGGAA

Basic information

species Glycine max
transcript GLYMA16G00440.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G00440.1 (Glycine max), 3'ss of exon 4
lower sequence: LOC_Os07g07194.1 (Oryza sativa), 3'ss of exon 6
---------gtgagcaaaattgctatttttatttgcatacatcctat-ctaaataacatttcctttcggtatttgtctataacaattgtccattatgcagATAAACCACCGATTGAAGAGCTCCACCAATTCTTGGAATTCCAGCTGCCAAGGCAGTGGGCACCTGTATTCAGTGACCTTCCTCTTGGTCCACAACGGAA
         |  |   | |     ||| |   | | | | |        ||      |          | |  ||| |   |    |      | ||||||||| || |  ||||||||||| |||||||| ||||| |||||||| |||||||||||||| ||||| | ||||||||| ||||||||||| ||  ||||
tcgtatcatggcatacagacaatcattctagctaggaaaaagatggcattaggcctgaaacaacacaagcaactgtgtgacatgtgtaagttctgtgcagATAAGCCTCAAATTGAAGAGCTGCACCAATTTTTGGAGTTCCAGCTTCCAAGGCAGTGGGCTCCTGTTTACAGTGACCTCCCTCTTGGTCCTCAGAGGAA

upper sequence: GLYMA16G00440.1 (Glycine max), 3'ss of exon 4
lower sequence: LOC_Os01g72860.1 (Oryza sativa), 3'ss of exon 5
gtgagcaaaattgctatttttatttgcatacatc---------ctatctaaataacatttcctttcggtatttgtctataacaattgtccatt---atgcagATAAACCACCGATTGAAGAGCTCCACCAATTCTTGGAATTCCAGCTGCCAAGGCAGTGGGCACCTGTATTCAGTGACCTTCCTCTTGGTCCACAACGGAA
   |  || ||    ||| |  || ||| |||           | |   || | | |      ||    | ||   |   ||  || |   ||    ||||||||| || |   |||| ||  | ||||| || || || || ||||| |||||||||||||||||||| | ||||||||| ||||| ||||| ||  ||||
--cacaaacataagaattctagttagcaaacagtggcattgggccagagaattgaaagcaatgttaaacagttaggtgataccttttttttttctggtgcagATAAGCCGCGAGTTGAGGAATTGCACCAGTTTTTAGAGTTTCAGCTTCCAAGGCAGTGGGCACCTGTCTACAGTGACCTCCCTCTGGGTCCTCAGAGGAA

upper sequence: GLYMA16G00440.1 (Glycine max), 3'ss of exon 4
lower sequence: GRMZM2G028758_T02 (Zea mays), 3'ss of exon 5
----gtgagcaaaattgctattttt-----atttgcatacatcctatctaaataacatttcctttcggtatttgtctataacaattgtcca--ttat-gcagATAAACCACCGATTGAAGAGCTCCACCAATTCTTGGAATTCCAGCTGCCAAGGCAGTGGGCACCTGTATTCAGTGACCTTCCTCTTGGTCCACAACGGAA
     || || |  |||| |  ||      || ||  |     |     | |||||| | || |     |  ||  |   | | || | ||  |||| |||||||| || ||||||||||| || || ||||| ||||| ||||| || ||||| || ||||||||||| | ||||||||  ||||||||||| ||  ||| 
acaaatgtgccacgttgccagcttacaagaatgtgattgtgaacagctgatataacaatgccct--aaaaactgggtgatagatttattcaatttattgcagATAAGCCTCCGATTGAAGAACTACATCAATTTTTGGAGTTCCAACTACCAAGACAATGGGCACCTGTGTACAGTGACCACCCTCTTGGTCCTCAGAGGAG

upper sequence: GLYMA16G00440.1 (Glycine max), 3'ss of exon 4
lower sequence: GRMZM2G435034_T01 (Zea mays), 3'ss of exon 4
gtgagcaaaattgctatttttatttgcatacatcctatctaaataacatttcctttcggtatttgtctataacaatt-----gtccatta--------tgcagATAAACCACCGATTGAAGAGCTCCACCAATTCTTGGAATTCCAGCTGCCAAGGCAGTGGGCACCTGTATTCAGTGACCTTCCTCTTGGTCCACAACGGAA
      |   |||| | ||  |   ||| |||  |||   |||| |   ||          |     |  |||||        |  |||         |||||||||||| || || || ||  | || || || ||||| |||||||| |||||||||||||||||||| | |||||| ||  |||| ||||| ||  ||||
--acttatggttgcaacttgcaaa-gcacacaatctagaaaaattagtattatgccgcaagtccaattgcaacaacctggtgatatattgaaatttggtgcagATAAACCTCCAATCGAGGAATTACATCAGTTTTTGGAGTTCCAGCTTCCAAGGCAGTGGGCACCTGTTTACAGTGATCTCGCTCTGGGTCCTCAGAGGAA

upper sequence: GLYMA16G00440.1 (Glycine max), 3'ss of exon 4
lower sequence: AT4G24290.2 (Arabidopsis thaliana), 3'ss of exon 6
-gtgagcaaaattgctattt-ttatttg-catacatcctatctaaataacatttcctttcggtatttgtctataacaattgtccatta---------tgcagATAAACCACCGATTGAAGAGCTCCACCAATTCTTGGAATTCCAGCTGCCAAGGCAGTGGGCACCTGTATTCAGTGACCTTCCTCTTGGTCCACAACGGAA
  |||       ||| || | |||| ||     | |   ||  | |||  ||   |     |  || |  ||  |||||    |||||         || |||||| ||||| ||||||||||| || || ||  | || || ||||| ||||||||||||||||| || || ||||| |||||||||||||| ||||| ||
gatgattttttctgccatctgttatatgatccgcgtaagatgaacatactataaacgaaaagccttgggtta--acaatccaacattaactgagatttgtagATAAGCCACCAATTGAAGAGCTGCATCAGTTTCTCGAGTTTCAGCTACCAAGGCAGTGGGCACCCGTTTTTAGTGAACTTCCTCTTGGTCCGCAACGAAA

upper sequence: GLYMA16G00440.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv12s0035g01040.t01 (Vitis vinifera), 3'ss of exon 6
--------gtgagcaaaattgctatttttatttgcatacatcctatctaaataacatttcctttcggtatttgtctataacaatt--gtccattatgcagATAAACCACCGATTGAAGAGCTCCACCAATTCTTGGAATTCCAGCTGCCAAGGCAGTGGGCACCTGTATTCAGTGACCTTCCTCTTGGTCCACAACGGAA
            |||   ||   ||| || |    ||   | ||   |   | | | |   ||    ||    ||| ||||| ||   |      ||||||||||||||| |||||||| || | ||| || |||||||| || |||||||||||||||||||| || |||||||| |||||||||||||||||| ||| 
gtgtagaaaaaggcagcgttcacattcttttgcttattgctgctgaatcggtcaaaatcatttgaactaaccatctgtaacattttcattgtccttgcagATAAACCACCCATTGAAGAACTACGCCAGTTTTTGGAATTTCAACTGCCAAGGCAGTGGGCACCAGTGTTCAGTGAACTTCCTCTTGGTCCACAAAGGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatctaaataacatttcctttcggtatttgtctataacaattgtccattatgcagATAAACCACCGATTGAAGAGCTCCACCAATTCTTGGAATTCCAGCTGCCAAGGCAGTGGGCACCTGTATTCAGTGACCTTCCTCTTGGTCCACAACGGAA
     aaataacattt  TA-rich tract