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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaatttgttctccctaattttaataaactattctgaagattaaattcatggatagttattgagtgaaatagtgctatatagGTGGTTTGCGAAGCGGTTTTTGCATCCAGACATAGTTGTTGAATACAATTATATATTTCTTTGGGATGAGGACCTTCTTGTTGATAATTTTGACCCAAAA

Basic information

species Glycine max
transcript GLYMA16G00290.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G00290.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv12s0035g01350.t01 (Vitis vinifera), 3'ss of exon 6
-----------------gtgaatttgttctccctaattttaa---taaactattctgaagattaaattcatggatagttattgagtgaa---------atagtgctatatagGTGGTTTGCGAAGCGGTTTTTGCATCCAGACATAGTTGTTGAATACAATTATATATTTCTTTGGGATGAGGACCTTCTTGTTGATAATTTTGACCCAAAA
                    | ||  || | ||||    |     || ||   | |||  ||  || |  | || |  | |      ||         |||     | | ||||||||||| || || || || |||||||||||||||| |||||| |||||||| || ||||||||||| ||||||   ||||| |||||| | |||  |
gtaatgtatgatccattacaagttatttttgcctatgcctggagttatacatgtttgacaatacaagtttttgacatatgtgtgacaaagaatactcgatataatgacacagGTGGTTTGCAAAACGCTTCTTACATCCAGACATAGTTGCTGAATATAATTATATTTTCCTTTGGGATGAAGACCTTGGGGTTGAGAATTTTCATCCAGGA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

actattctgaagattaaattcatggatagttattgagtgaaatagtgctatatagGTGGTTTGCGAAGCGGTTTTTGCATCCAGACATAGTTGTTGAATACAATTATATATTTCTTTGGGATGAGGACCTTCTTGTTGATAATTTTGACCCAAAA
         aagattaaattcat  TA-rich tract