1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
gtttgttgtgctacattattttttgttcttgatataatcaagccacaagaaaatggtgtttacatggttccattttttgcagTTGCCAATTCTGGTATAGTGGACACCCTGCTATCGTGGGCAGATTTTAAGCAAAGCAAAGATCTGAAAAAATCTGATGGGACAAAAACTCAGAGGCTTCG
species | Glycine max |
transcript | GLYMA15G43170.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GGCTAGTTTTGGTTCCAAATGTGATATTCCTGAATCGATGCTGAAGGAAG TTGCCAATTCTGGTATAGTGGACACCCTGCTATCGTGGGCAGATTTTAAGCEST: gi|208158432|gb|GD956939.1|GD956939
genomic: GGCTAGTTTTGGTTCCAAATGTGATATTCCTGAATCGATGCTGAAGGAAGgtttgttgtg ... ttttttgcagTTGCCAATTCTGGTATAGTGGACACCCTGCTATCGTGGGCAGATTTTAAGC
EST: ATATTCCTGAATCGATGCTGAAGGAAG TTGCCAATTCTGGTATAGTGGACACCCTGCTATCGTGGGCAGATTTTAAGCEST: gi|208146741|gb|GD947166.1|GD947166
genomic: ATATTCCTGAATCGATGCTGAAGGAAGgtttgttgtg ... ttttttgcagTTGCCAATTCTGGTATAGTGGACACCCTGCTATCGTGGGCAGATTTTAAGC
EST: ATATTCCTGAATCGATGCTGAAGGAAG TTGCCAATTCTGGTATAGTGGACACCCTGCTATCGTGGGCAGATTTTAAGCEST: gi|207745774|gb|GD720986.1|GD720986
genomic: ATATTCCTGAATCGATGCTGAAGGAAGgtttgttgtg ... ttttttgcagTTGCCAATTCTGGTATAGTGGACACCCTGCTATCGTGGGCAGATTTTAAGC
EST: CGATGCTGAAGGAAG TTGCCAATTCTGGTATAGTGGACACCCTGCTATCGTGGGCAGATTTTAAGC
genomic: CGATGCTGAAGGAAGgtttgttgtg ... ttttttgcagTTGCCAATTCTGGTATAGTGGACACCCTGCTATCGTGGGCAGATTTTAAGC
cttgatataatcaagccacaagaaaatggtgtttacatggttccattttttgcagTTGCCAATTCTGGTATAGTGGACACCCTGCTATCGTGGGCAGATTTTAAGCAAAGCAAAGATCTGAAAAAATCTGATGGGACAAAAACTCAGAGGCTTCG
tcttgat putative branch site (score: 4)
ttccatttttt putative PPT
tataatcaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgttgtgctacattattttttgttcttgatataatcaagccacaagaaaatggtgtttacatggttccattttttgcagTTGCCAATTCTGGTATAGTGGACACCCTGCTATCGTGGGCAGATTTTAAGCAAAGCAAAGATCTGAAAAAATCTGATGGGACAAAAACTCAGAGGCTTCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG