1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' |
...cttcatgttagcttgtaaattgcaaaacattgattaatacttaacaaaaattgttatatgtatatcttatgtttaatctatatataaaacctggttgcagGAACGTGTTAAGAAGCTGAAGAAAGATCATGGAAGTGTTGAATTGGGAAAAATTACTGTTGATATG
species | Glycine max |
transcript | GLYMA15G42300.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CAGAGTATCAG GAACGTGTTAAGAAGCTGAAGAAAGATCATGGAAGTGTTGAATTGGGAAAAEST: gi|192324396|gb|FK015747.1|FK015747
genomic: CAGAGTATCAGgtttggctgc ... ctggttgcagGAACGTGTTAAGAAGCTGAAGAAAGATCATGGAAGTGTTGAATTGGGAAAA
EST: GATCTTTATTCTGAGTTGAAGGAACTAGTTCCAGAGTATCAG GAACGTGTTAAGAAGCTGAAGAAAGATCATGGAAGTGTTGAATTGGGAAAAEST: gi|254317135|gb|GR826080.1|GR826080
genomic: GATCTTTATTCTGAGTTGAAGGAACTAGTTCCAGAGTATCAGgtttggctgc ... ctggttgcagGAACGTGTTAAGAAGCTGAAGAAAGATCATGGAAGTGTTGAATTGGGAAAA
EST: GATCTTTATTCTGAGTTGAAGGAACTAGTTCCAGAGTATCAG GAACGTGTTAAGAAGCTGAAGAAAGATCATGGAAGTGTTGAATTGGGAAAAEST: gi|19052548|gb|BM731215.1|BM731215
genomic: GATCTTTATTCTGAGTTGAAGGAACTAGTTCCAGAGTATCAGgtttggctgc ... ctggttgcagGAACGTGTTAAGAAGCTGAAGAAAGATCATGGAAGTGTTGAATTGGGAAAA
EST: GATCTTTATTCTGAGTTGAAGGAACTAGTTCCTTTTTATCAG GAACGTGTTAAGAAGCTGAAGAAAGATCATGGAAGTGTTGAATTGGGAAAAEST: gi|213591664|gb|DB969764.1|DB969764
genomic: GATCTTTATTCTGAGTTGAAGGAACTAGTTCCAGAGTATCAGgtttggctgc ... ctggttgcagGAACGTGTTAAGAAGCTGAAGAAAGATCATGGAAGTGTTGAATTGGGAAAA
EST: GATCTTTATTCTGAGTTGAAGGAACTAGTTCCAGAGTATCAG GAACGTGTTAAGAAGCTGAAGAAAGATCATGGAAGTGTTGAATTGGGAAAAEST: gi|213588618|gb|DB957654.1|DB957654
genomic: GATCTTTATTCTGAGTTGAAGGAACTAGTTCCAGAGTATCAGgtttggctgc ... ctggttgcagGAACGTGTTAAGAAGCTGAAGAAAGATCATGGAAGTGTTGAATTGGGAAAA
EST: GATCTTTATTCTGAGTTGAAGGAACTAGTTCCAGAGTATCAG GAACGTGTTAAGAAGCTGAAGAAAGATCATGGAAGTGTTGAATTGGGAAAAEST: gi|213604537|gb|DB970657.1|DB970657
genomic: GATCTTTATTCTGAGTTGAAGGAACTAGTTCCAGAGTATCAGgtttggctgc ... ctggttgcagGAACGTGTTAAGAAGCTGAAGAAAGATCATGGAAGTGTTGAATTGGGAAAA
EST: GATCTTTATTCTGAGTTGAAGGAACTAGTTCCAGAGTATCAG GAACGTGTTAAGAAGCTGAAGAAAGATCATGGAAGTGTTGAATTGGGAAAAEST: gi|151410306|gb|EV280121.1|EV280121
genomic: GATCTTTATTCTGAGTTGAAGGAACTAGTTCCAGAGTATCAGgtttggctgc ... ctggttgcagGAACGTGTTAAGAAGCTGAAGAAAGATCATGGAAGTGTTGAATTGGGAAAA
EST: GATCTTTATTCTGAGTTGAAGGAACTAGTTCCAGAGTATCAG GAACGTGTTAAGAAGCTGAAGAAAGATCATGGAAGTGTTGAATTGGGAAAA
genomic: GATCTTTATTCTGAGTTGAAGGAACTAGTTCCAGAGTATCAGgtttggctgc ... ctggttgcagGAACGTGTTAAGAAGCTGAAGAAAGATCATGGAAGTGTTGAATTGGGAAAA
aaaaattgttatatgtatatcttatgtttaatctatatataaaacctggttgcagGAACGTGTTAAGAAGCTGAAGAAAGATCATGGAAGTGTTGAATTGGGAAAAATTACTGTTGATATG
gtttaat putative branch site (score: 4)
ttgttatatgtatatc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttcatgttagcttgtaaattgcaaaacattgattaatacttaacaaaaattgttatatgtatatcttatgtttaatctatatataaaacctggttgcagGAACGTGTTAAGAAGCTGAAGAAAGATCATGGAAGTGTTGAATTGGGAAAAATTACTGTTGATATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- tcatgtt
- - - - - gcttgta
- - - - - - - - - - - caaaaca
- - - - - - - - - - - - - - - - - - - - - aacaaaa