Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gtagatcagaaattttatagttacatcatggaagttgcctgaattgtaattttctcatgataatagttacatcctgttaattttctcttcaatttccaagGTATGATTTGCTAATGGTACATAAAGAAGAACTTGCACAGCTTATAACCTTGGAGCAGGGGAAACCTCTTAAAGAGTCTGTTGGTGAG

Basic information

species Glycine max
transcript GLYMA15G41690.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213596335|gb|DB960236.1|DB960236
EST:     CATGGAGCAAAACCACTGCCGCTGAACGAAGCAAATTTCTGAGGAAATG                         GTATGATTTGCTAATGGTACATAAAGAAGAACTTGCACAGCTTATAACCTT
genomic: CATGGAGCAAAACCACTGCCGCTGAACGAAGCAAATTTCTGAGGAAATGgtatatttgt ... aatttccaagGTATGATTTGCTAATGGTACATAAAGAAGAACTTGCACAGCTTATAACCTT
EST: gi|213614121|gb|DB964893.1|DB964893
EST:     CATGGAGCAAAACCACTGCCGCTGAACGAAGCAAATTTCTGAGGAAATG                         GTATGATTTGCTAATGGTACATAAAGAAGAACTTGCACAGCTTATAACCTT
genomic: CATGGAGCAAAACCACTGCCGCTGAACGAAGCAAATTTCTGAGGAAATGgtatatttgt ... aatttccaagGTATGATTTGCTAATGGTACATAAAGAAGAACTTGCACAGCTTATAACCTT
EST: gi|209725352|gb|BW651520.1|BW651520
EST:     CATGGAGCAAAACCACTGCCGCTGAACGAAGCAAATTTCTGAGGAAATG                         GTATGATTTGCTAATGGTACATAAAGAAGAACTTGCACAGCTTATAACCTT
genomic: CATGGAGCAAAACCACTGCCGCTGAACGAAGCAAATTTCTGAGGAAATGgtatatttgt ... aatttccaagGTATGATTTGCTAATGGTACATAAAGAAGAACTTGCACAGCTTATAACCTT
EST: gi|209708413|gb|BW665388.1|BW665388
EST:     CATGGAGCAAAACCACTGCCGCTGAACGAAGCAAATTTCTGAGGAAATG                         GTATGATTTGCTAATGGTACATAAAGAAGAACTTGCACAGCTTATAACCTT
genomic: CATGGAGCAAAACCACTGCCGCTGAACGAAGCAAATTTCTGAGGAAATGgtatatttgt ... aatttccaagGTATGATTTGCTAATGGTACATAAAGAAGAACTTGCACAGCTTATAACCTT
EST: gi|15337286|gb|BI497942.1|BI497942
EST:     CATGGAGCAAAACCACTGCCGCTGAACGAAGCAAATTTCTGAGGAAATG                         GTATGATTTGCTAATGGTACATAAAGAAGAACTTGCACAGCTTATAACCTT
genomic: CATGGAGCAAAACCACTGCCGCTGAACGAAGCAAATTTCTGAGGAAATGgtatatttgt ... aatttccaagGTATGATTTGCTAATGGTACATAAAGAAGAACTTGCACAGCTTATAACCTT
EST: gi|298188148|gb|HO034841.1|HO034841
EST:     TCATGGAGCAAAACCACTGCCGCTGAACGAAGCAAATTTCTGAGGAAATG                         GTATGATTTGCTAATGGTACATAAAGAAGAACTTGCACAGCTTATAACCTT
genomic: TCATGGAGCAAAACCACTGCCGCTGAACGAAGCAAATTTCTGAGGAAATGgtatatttgt ... aatttccaagGTATGATTTGCTAATGGTACATAAAGAAGAACTTGCACAGCTTATAACCTT
EST: gi|151395152|gb|EV265023.1|EV265023
EST:     CATGGAGCAAAACCACTGCCGCTGAACGAAGCAAATTTCTGGGGAAATG                         GTATGATTTGCTAATGGTACATAAAGAAGAACTTGCACAGCTTATAACCTT
genomic: CATGGAGCAAAACCACTGCCGCTGAACGAAGCAAATTTCTGAGGAAATGgtatatttgt ... aatttccaagGTATGATTTGCTAATGGTACATAAAGAAGAACTTGCACAGCTTATAACCTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtaattttctcatgataatagttacatcctgttaattttctcttcaatttccaagGTATGATTTGCTAATGGTACATAAAGAAGAACTTGCACAGCTTATAACCTTGGAGCAGGGGAAACCTCTTAAAGAGTCTGTTGGTGAG
                             tgttaat  putative branch site (score: 3)
                                   ttttctcttcaatttc  CT-rich tract
              ataatagtta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtagatcagaaattttatagttacatcatggaagttgcctgaattgtaattttctcatgataatagttacatcctgttaattttctcttcaatttccaagGTATGATTTGCTAATGGTACATAAAGAAGAACTTGCACAGCTTATAACCTTGGAGCAGGGGAAACCTCTTAAAGAGTCTGTTGGTGAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - catggaa
- - - - - - - - - - - - - - - - -gttgcct
- - - - - - - - - - - - - - - - - - - - - - - - - - -ctcatga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catcctg