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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...actttgtattaactgctgattttttcttcaaagtcacggtttaagccttgcacaatttctgtcttcctgatgtcatcttcattcttgtttttaactacagGAAGGTGTACAACAACTTGTTCTTGGTTTATACATCATCAGGGGTGACAACAT

Basic information

species Glycine max
transcript GLYMA15G40590.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G40590.1 (Glycine max), 3'ss of exon 4
lower sequence: GRMZM5G872417_T01 (Zea mays), 3'ss of exon 4
---actttgtattaactgctgattttttcttcaaagtc-acggtttaagccttgcacaatttctgtcttcctgatgtcatcttcattcttgtttttaact-acagGAAGGTGTACAACAACTTGTTCTTGGTTTATACATCATCAGGGGTGACAACAT
       || ||      ||    | ||||  ||  ||  | ||| |     ||   | ||     |    |    || |  | ||     |  || |||  ||||| || || |||||||||||||||||| | ||||| |||||||||||||||||
tgcgtactgcatgtggcactatcatattctctaatttctgctgttca-----tgagaatttggcagcacatttggatccttatgataaacatgattgacttgcagGAGGGAGTCCAACAACTTGTTCTTGGTCTGTACATTATCAGGGGTGACAACAT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151399825|gb|EV269696.1|EV269696
EST:     CAACAAATATAATTCTTGATGAGTCCCATGAACGAGTTTATTCTACCAAG                         GAAGGTGTACAACAACTTGTTCTTGGTTTATACATCATCAGGGGTGACAAC
genomic: CAACAAATATAATTCTTGATGAGTCCCATGAACGAGTTTATTCTACCAAGgtatgatgaa ... ttaactacagGAAGGTGTACAACAACTTGTTCTTGGTTTATACATCATCAGGGGTGACAAC
EST: gi|213598025|gb|DB972213.1|DB972213
EST:     CAACAAATATAATTCTTGATGAGTCCCATGAACGAGTTTATTCTACCAAG                         GAAGGTGTACAACAACTTGTTCTTGGTTTATACATCATCAGGGGTGACAAC
genomic: CAACAAATATAATTCTTGATGAGTCCCATGAACGAGTTTATTCTACCAAGgtatgatgaa ... ttaactacagGAAGGTGTACAACAACTTGTTCTTGGTTTATACATCATCAGGGGTGACAAC
EST: gi|22927651|gb|BU544790.1|BU544790
EST:     CCATGAACGAGTTTATTCTACCAAG                         GAAGGTGTACAACAACTTGTTCTTGGTTTATACATCATCAGGGGTGACAAC
genomic: CCATGAACGAGTTTATTCTACCAAGgtatgatgaa ... ttaactacagGAAGGTGTACAACAACTTGTTCTTGGTTTATACATCATCAGGGGTGACAAC
EST: gi|192300038|gb|FG992191.1|FG992191
EST:     CAACAAATATAATTCTTGATGAGTCCCATGAACGAGTTTATTTTACCAAG                         GAAGGTGTACAACAACTTGTTCTTGGTTTATACATCATCAGGGGTGACAAC
genomic: CAACAAATATAATTCTTGATGAGTCCCATGAACGAGTTTATTCTACCAAGgtatgatgaa ... ttaactacagGAAGGTGTACAACAACTTGTTCTTGGTTTATACATCATCAGGGGTGACAAC
EST: gi|193496721|gb|FK460305.1|FK460305
EST:     CAACAAATATAATTCTTGATGAGTCCCATGAACGAGTTTATTCTACCAAG                         GAAGGTGTACAACAACATGTTCTTGGTTTATACATCATCAGGGGTGACAAC
genomic: CAACAAATATAATTCTTGATGAGTCCCATGAACGAGTTTATTCTACCAAGgtatgatgaa ... ttaactacagGAAGGTGTACAACAACTTGTTCTTGGTTTATACATCATCAGGGGTGACAAC
EST: gi|208303248|gb|GE101069.1|GE101069
EST:     CTTGATGAGTCCCATGAACGAGTTTATTCTACCAAG                         GAAGGTGTACAACAACTTGTTCTTGGTTTATACATCATCAGGGGTGACAAC
genomic: CTTGATGAGTCCCATGAACGAGTTTATTCTACCAAGgtatgatgaa ... ttaactacagGAAGGTGTACAACAACTTGTTCTTGGTTTATACATCATCAGGGGTGACAAC
EST: gi|192300037|gb|FG992190.1|FG992190
EST:     CAACAAATATAATTCTTGATGAGTCCCATGAACGAGTTTATTCTACCAAG                         GAAGGTGTACAACAACTTGTTCTTGGTTTATACATCATCAGGGGTGACAAC
genomic: CAACAAATATAATTCTTGATGAGTCCCATGAACGAGTTTATTCTACCAAGgtatgatgaa ... ttaactacagGAAGGTGTACAACAACTTGTTCTTGGTTTATACATCATCAGGGGTGACAAC
EST: gi|151395293|gb|EV265164.1|EV265164
EST:     CAACAAATATAATTCTTGATGAGTCCCATGAACGAGTTTATTCTACCAAG                         GAAGGTGTACAACAACTTGTTCTTGGTTTATACATCATCAGGGGTGACAAC
genomic: CAACAAATATAATTCTTGATGAGTCCCATGAACGAGTTTATTCTACCAAGgtatgatgaa ... ttaactacagGAAGGTGTACAACAACTTGTTCTTGGTTTATACATCATCAGGGGTGACAAC
EST: gi|7285928|gb|AW598415.1|AW598415
EST:     CATGAACGAGTTTATTCTACCAAG                         GAAGGTGTACAACAACTTGTTCTTGGTTTATACATCATCAGGGGTGACAAC
genomic: CATGAACGAGTTTATTCTACCAAGgtatgatgaa ... ttaactacagGAAGGTGTACAACAACTTGTTCTTGGTTTATACATCATCAGGGGTGACAAC
EST: gi|192310890|gb|FG998894.1|FG998894
EST:     CAACAAATATAATTCTTGATGAGTCCCATGAACGAGTTTATTCTACCAAG                         GAAGGTGTACAACAACTTGTTCTTGGTTTATACATCATCAGGGGTGACAAC
genomic: CAACAAATATAATTCTTGATGAGTCCCATGAACGAGTTTATTCTACCAAGgtatgatgaa ... ttaactacagGAAGGTGTACAACAACTTGTTCTTGGTTTATACATCATCAGGGGTGACAAC
EST: gi|192310889|gb|FG998893.1|FG998893
EST:     CAACAAATATAATTCTTGATGAGTCCCATGAACGAGTTTATTCTACCAAG                         GAAGGTGTACAACAACTTGTTCTTGGTTTATACATCATCAGGGGTGACAAC
genomic: CAACAAATATAATTCTTGATGAGTCCCATGAACGAGTTTATTCTACCAAGgtatgatgaa ... ttaactacagGAAGGTGTACAACAACTTGTTCTTGGTTTATACATCATCAGGGGTGACAAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccttgcacaatttctgtcttcctgatgtcatcttcattcttgtttttaactacagGAAGGTGTACAACAACTTGTTCTTGGTTTATACATCATCAGGGGTGACAACAT
                                           ttttaac  putative branch site (score: 2)
                              tcttcattcttgtttt  CT-rich tract
                                   attcttgtttttaa  TA-rich tract