Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtcttgtcctgaaaatcctactcacttcaaattctccttaacacacagacttatttttttaaccaatatcatgcaattttcatgaatttgtgtttacagATGGTGCAAGGACCGCTCTAAATCTTGGTGGTACTGTGCTTGGATACTATCCAGTCAGGGTTCTTCCTTCAAAAACTGCCATTCTTCCAGTGAATCCTAC

Basic information

species Glycine max
transcript GLYMA15G40060.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G40060.1 (Glycine max), 3'ss of exon 4
lower sequence: AT1G53650.2 (Arabidopsis thaliana), 3'ss of exon 4
gtaagtcttgtcctgaaaatcctactcacttcaaattctccttaacacacagacttatttttttaaccaatatcatgcaattttcatgaatttgtgttta----cagATGGTGCAAGGACCGCTCTAAATCTTGGTGGTACTGTGCTTGGATACTATCCAGTCAGGGTTCTTCCTTCAAAAACTGCCATTCTTCCAGTGAATCCTAC
||||||     |      ||  |||| |      ||  || |||  |   | | | |  | |  |       | |    |||   |||||||||| || |    |||| |||||| |  | ||| ||| ||||||||| ||  || | ||||| || ||||| || ||  | |||||||||||||| ||||||||||||||||| ||
gtaagttaaagctattggattttactta------atcttctttacaaacaaaattcaagtgtcaagtttgagttac---attagtatgaatttgttttgaaaaacagAAGGTGCACGATCGGCTTTAAGTCTTGGTGGAACAATGATCGGATATTACCCAGTTAGAGTCTTACCTTCAAAAACTGCTATTCTTCCAGTGAATCCCAC

upper sequence: GLYMA15G40060.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv19s0176g00140.t01 (Vitis vinifera), 3'ss of exon 4
gtaagtcttgtcctgaaaatcctactcacttcaaatt-ctccttaacaca--cagacttatttttttaaccaatatcatgcaattttca-tgaatttgtgtttacagATGGTGCAAGGACCGCTCTAAATCTTGGTGGTACTGTGCTTGGATACTATCCAGTCAGGGTTCTTCCTTCAAAAACTGCCATTCTTCCAGTGAATCCTAC
|||||| ||    |     |      ||   ||  || ||| ||           |  | | | | |      | ||||   ||  ||| |   | | |||  ||||||||||| ||  | ||  |||| |||||||| ||  |||| || ||||||||||| |||||  | |||||||| ||||| || ||||| |||||||||||
gtaagtttt--tttatttttttgggccataacatttttctcattggtgttgttgaaagtgtgtctatgtgatttttcatatcatactcacttggtatatgtcaacagATGGTGCGAGAGCAGCATTAAACCTTGGTGGGACAATGCTAGGTTACTATCCAGTTAGGGTCTTACCTTCAAAGACTGCTATCCTTCCTGTGAATCCTAC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254314632|gb|GR829625.1|GR829625
EST:     GATCCACATTCTGTTCTCCGTTTTGCTTTTTGTTGAGTTTGCAGATGAGT                         ATGGTGCAAGGACCGCTCTAAATCTTGGTGGTACTGTGCTTGGATACTATC
genomic: GATCCACATTCTGTTCTCCGTTTTGC-TTTTGTTGAGTTTGCAGATGAGTgtaagtcttg ... gtgtttacagATGGTGCAAGGACCGCTCTAAATCTTGGTGGTACTGTGCTTGGATACTATC
EST: gi|7588858|gb|AW704644.1|AW704644
EST:     GATCCACATTCTGTTCTCCGTTTTGCTTTTGTTGAGTTTGCAGATGAGT                         ATGGTGCAAGGACCGCTCTAAATCTTGGTGGTACTGTGCTTGGATACTATC
genomic: GATCCACATTCTGTTCTCCGTTTTGCTTTTGTTGAGTTTGCAGATGAGTgtaagtcttg ... gtgtttacagATGGTGCAAGGACCGCTCTAAATCTTGGTGGTACTGTGCTTGGATACTATC
EST: gi|58020690|gb|CX707432.1|CX707432
EST:     TGATCCACATTCTGTTCTCCGTTTTGCTTTTGTTGAGTTTGCAGATGAGT                         ATGGTGCAAGGACCGCTCTAAATCTTGGTGGTACTGTGCTTGGATACTATC
genomic: TGATCCACATTCTGTTCTCCGTTTTGCTTTTGTTGAGTTTGCAGATGAGTgtaagtcttg ... gtgtttacagATGGTGCAAGGACCGCTCTAAATCTTGGTGGTACTGTGCTTGGATACTATC
EST: gi|19053081|gb|BM731748.1|BM731748
EST:     TGATCCACATTCTGTTCTCCGTTTTGCTTTTGTTGAGTTTGCAGATGAGT                         ATGGTGCAAGGACCGCTCTAAATCTTGGTGGTACTGTGCTTGGATACTATC
genomic: TGATCCACATTCTGTTCTCCGTTTTGCTTTTGTTGAGTTTGCAGATGAGTgtaagtcttg ... gtgtttacagATGGTGCAAGGACCGCTCTAAATCTTGGTGGTACTGTGCTTGGATACTATC
EST: gi|151403013|gb|EV272826.1|EV272826
EST:     TGATCCACATTCTGTTCTCCGTTTTGCTTTTGTTGAGTTTGCAGATGAGT                         ATGGTGCGAGGACCGCTCTAAATCTTGGTGGTACTGTGCTTGGATACTATC
genomic: TGATCCACATTCTGTTCTCCGTTTTGCTTTTGTTGAGTTTGCAGATGAGTgtaagtcttg ... gtgtttacagATGGTGCAAGGACCGCTCTAAATCTTGGTGGTACTGTGCTTGGATACTATC
EST: gi|27425564|gb|CA937084.1|CA937084
EST:     TGATCCACATTCTGTTCTCCGTTTTGCTTTTGTTGAGTTTGCAGATGAGT                         ATGGTGCAAGGACCGCTCTNAATCTTGGTGGTACTGTGCTTGGA
genomic: TGATCCACATTCTGTTCTCCGTTTTGCTTTTGTTGAGTTTGCAGATGAGTgtaagtcttg ... gtgtttacagATGGTGCAAGGACCGCTCTAAATCTTGGTGGTACTGTGCTTGGA
EST: gi|193704004|gb|FK647408.1|FK647408
EST:     TGATCCACATTCTGTTCTCCGTTTTGCTTTTGTTGAGTTTGCAGATGAGT                         ATGGTGCAAGGACCGCTCTAAATCTTGGTGGTACTGTGCTTGGATACTAT
genomic: TGATCCACATTCTGTTCTCCGTTTTGCTTTTGTTGAGTTTGCAGATGAGTgtaagtcttg ... gtgtttacagATGGTGCAAGGACCGCTCTAAATCTTGGTGGTACTGTGCTTGGATACTAT
EST: gi|21677855|gb|BQ630206.1|BQ630206
EST:     TGATCCACATTCTGTTCTCCGTTTTGCTTTTGTTGAGTTTGCAGATGAGT                         ATGGTGCAAGGACCGCTCTAAATCTTGGTGGTACTGTGCTTGGATACTATC
genomic: TGATCCACATTCTGTTCTCCGTTTTGCTTTTGTTGAGTTTGCAGATGAGTgtaagtcttg ... gtgtttacagATGGTGCAAGGACCGCTCTAAATCTTGGTGGTACTGTGCTTGGATACTATC
EST: gi|14989895|gb|BI315576.1|BI315576
EST:     TGATCCACATTCTGTTCTCCGTTTTGCTTTTGTTGAGTTTGCAGATGAGT                         ATGGTGCAAGGACCGCTCTAAATCTTGGTGGTACTGTGCTTGGATACTATC
genomic: TGATCCACATTCTGTTCTCCGTTTTGCTTTTGTTGAGTTTGCAGATGAGTgtaagtcttg ... gtgtttacagATGGTGCAAGGACCGCTCTAAATCTTGGTGGTACTGTGCTTGGATACTATC
EST: gi|58020886|gb|CX707628.1|CX707628
EST:     TGATCCACATTCTGTTCTCCGTTTTGCTTTTGTTGAGTTTGCAGATGAGT                         ATGGTGCAAGGACCGCTCTAAATCTTGGTGGTACTGTGCTTGGATACTATC
genomic: TGATCCACATTCTGTTCTCCGTTTTGCTTTTGTTGAGTTTGCAGATGAGTgtaagtcttg ... gtgtttacagATGGTGCAAGGACCGCTCTAAATCTTGGTGGTACTGTGCTTGGATACTATC
EST: gi|19270477|gb|BM886733.1|BM886733
EST:     TGATCCACATTCTGTTCTCCGTTTTGCTTTTGTTGAGTTTGCAGATGAGT                         ATGGTGCAAGGACCGCTCTAAATCTTGGTGGTACTGTGCTTGGATACTATC
genomic: TGATCCACATTCTGTTCTCCGTTTTGCTTTTGTTGAGTTTGCAGATGAGTgtaagtcttg ... gtgtttacagATGGTGCAAGGACCGCTCTAAATCTTGGTGGTACTGTGCTTGGATACTATC
EST: gi|58020497|gb|CX707239.1|CX707239
EST:     TGATCCACATTCTGTTCTCCGTTTTGCTTTTGTTGAGTTTGCAGATGAGT                         ATGGTGCAAGGACCGCTCTAAATCTTGGTGGTACTGTGCTTGGATACTATC
genomic: TGATCCACATTCTGTTCTCCGTTTTGCTTTTGTTGAGTTTGCAGATGAGTgtaagtcttg ... gtgtttacagATGGTGCAAGGACCGCTCTAAATCTTGGTGGTACTGTGCTTGGATACTATC
EST: gi|298191171|gb|HO038650.1|HO038650
EST:     TGATCCACATTCTGTTCTCCGTTTTGCTTTTGTTGAGTTTGCAGATGAGT                         ATGGTGCAAGGACCGCTCTAAATCTTGGTGGTACTGTGCTTGGATACTATC
genomic: TGATCCACATTCTGTTCTCCGTTTTGCTTTTGTTGAGTTTGCAGATGAGTgtaagtcttg ... gtgtttacagATGGTGCAAGGACCGCTCTAAATCTTGGTGGTACTGTGCTTGGATACTATC
EST: gi|8284333|gb|BE021892.1|BE021892
EST:     TGATCCACATTCTGTTCTCCGTTTTGCTTTTGTTGAGTTTGCAGATGAGT                         ATGGTGCAAGGACCGCTCTAAATCTTGGTGGTACTGTGCTTGGATACTATC
genomic: TGATCCACATTCTGTTCTCCGTTTTGCTTTTGTTGAGTTTGCAGATGAGTgtaagtcttg ... gtgtttacagATGGTGCAAGGACCGCTCTAAATCTTGGTGGTACTGTGCTTGGATACTATC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acagacttatttttttaaccaatatcatgcaattttcatgaatttgtgtttacagATGGTGCAAGGACCGCTCTAAATCTTGGTGGTACTGTGCTTGGATACTATCCAGTCAGGGTTCTTCCTTCAAAAACTGCCATTCTTCCAGTGAATCCTAC
            ttttaac  putative branch site (score: 2)
      ttatttttttaaccaa  TA-rich tract