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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggttgtgcacttttttactgactctgctgttacatttgtttgaaaaattgcttgctaatatatatttttcttttcttcattctgtcaatgtatcagGTTGGATTCGAGGAAGAGATTCATCGCGGGTATTGCATTATGAAGGAGGTGGATCCAGGACTCCATGCACTGATATTGTGTGTCCTATGTATATGCGTGT

Basic information

species Glycine max
transcript GLYMA15G37670.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G37670.1 (Glycine max), 3'ss of exon 4
lower sequence: GRMZM2G032496_T01 (Zea mays), 3'ss of exon 2
gtaggttgtgcacttttttactgactctgctgttacatttgtttgaaaaattgcttgctaatatatatttttcttttcttcattctgtcaatgtatcagGTTGGATTCGAGGAAGAGATTCATCGCGGGTATTGCATTATGAAGGAGGTGGATCCAGGACTCCATGCACTGATATTGTGTGTCCTATGTATATGCGTGT
                               || | || |  ||        | ||   ||| | | |  ||||  |||  ||  |  || | |   |||||||||||| | ||| ||| || |  |  |  | |||||||| |||||||| ||||| ||  ||| ||| ||||||||||| || ||||||||||||||
-------------------------------gtaaaatattcttacctgtcagttt---aatttctgtacttctcatcta-atggtaacattcttctagGTTGGATTCGTGAAAGGGATCCAACAAGACTCCTCCATTATGAGGGAGGTGGTTCCAGAACATCATCCACAGATATTGTGTGCCCCATGTATATGCGTGT

upper sequence: GLYMA15G37670.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv13s0067g03000.t01 (Vitis vinifera), 3'ss of exon 9
gtaggttgtgcacttttttactgac-tctgctg-ttacatttgtttgaaaaattgcttgctaatatatatttttcttttcttcattctg----tcaatgtatcagGTTGGATTCGAGGAAGAGATTCATCGCGGGTATTGCATTATGAAGGAGGTGGATCCAGGACTCCATGCACTGATATTGTGTGTCCTATGTATATGCGTGT
      ||  ||||  | |    || ||   || ||  ||||| ||  | | |   |  | | ||| |     |   || ||  ||         ||  | |||||||||||| ||||||| || || ||  || |||| ||||| ||||| |||||| | ||||||||||  || |||||||| || || ||||||||||||||
----tatgatcactactctgtaaacatccaatgcttgaatttgcttccata-tacatccccattatttgccagttacttattagtttgaatgactaaaatttcagGTTGGATTAGAGGAAGGGACTCCTCTAGGCTATTACATTACGAAGGGGGTGGAGCTAGGACTCCATCAACAGATATTGTCTGCCCCATGTATATGCGTGT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaaaaattgcttgctaatatatatttttcttttcttcattctgtcaatgtatcagGTTGGATTCGAGGAAGAGATTCATCGCGGGTATTGCATTATGAAGGAGGTGGATCCAGGACTCCATGCACTGATATTGTGTGTCCTATGTATATGCGTGT
           tgctaat  putative branch site (score: 2)
                       tttttcttttcttcat  putative PPT
              taatatatatttttct  TA-rich tract