Sequence
atgc intronic sequence ATGC exonic sequence...aactatcctaactaactagctcccttactaacggacaacttactaactactaatgggtatctactaatggacttctctctcatttttttctttctttcagGATTTGATCGCAAAGATTGCCCCCACATGGATGAATATTTCTTTGAAGATGAAAGAGGACCCAGAGACTGATAAAGCTTTTGGATGGGTGCTAGAAAT
Basic information
species | Glycine max |
transcript | GLYMA15G37490.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA15G37490.2 (Glycine max), 3'ss of exon 4
lower sequence: LOC_Os05g32060.1 (Oryza sativa), 3'ss of exon 3
------------------------------------------------------------------------------aactatcctaactaactagctccc-ttactaacggacaacttac--taactactaatgggta-tctactaatggacttctctctcatttttttc-------tttc-------tttcagGATTTGATCGCAAAGATTGCCCCCACATGGATGAATATTTCTTTGAAGATGAAAGAGGACCCAGAGACTGATAAAGCTTTTGGATGGGTGCTAGAAAT
|| || ||||| | | | || | | | ||| ||| | | | | || | | | || | | | || | ||| | ||| ||| | |||| | | | |||||||| || || |||||||||||||| ||||| ||||||||||| ||||| || ||||||||||||||||| | |||||
gtatctctcatctcgacgcatgattaataggatgcttaggtccggctataggagctgtcaagaactcaagatagcactgtctgcccaaactagttcttttcagttccgcataaaaaacatacatttaagaacattgtgcaatgccatagttcaatactgtttcaatgcattcgtgatgccttcaaaacatctccagGCCCAGCTTGAGAAGATTGCTCCAACTTGGATGAATATTTCGTTGAAAATGAAAGAGGATGTGGAGACAGACAAAGCTTTTGGATGGGTCTTGGAAAT
upper sequence: GLYMA15G37490.2 (Glycine max), 3'ss of exon 4
lower sequence: AT5G13500.1 (Arabidopsis thaliana), 3'ss of exon 4
--------------------------------------------------------aactatcctaa----ctaactagctcccttactaacggaca-----acttactaactactaatgggtatctactaa--tggacttctctctcatttttttctttctttcagGATTTGATCGCAAAGATTGCCCCCACATGGATGAATATTTCTTTGAAGATGAAAGAGGACCCAGAGACTGATAAAGCTTTTGGATGGGTGCTAGAAAT
| | || | || |||| | | | | || | | || | | || || | ||| | || | | ||| | | | | ||||| | | | ||||||||| || |||||||||||| | || ||| |||||| | || ||||| |||||||| || |||||||||||||| |||||
gtgagattatctgtgctatactgtttgtatatgtgttatttgacttgggccccaaagattttcagaggcgtttagctagatgtgatgttggtgtccaggaatatgttctgtttgttc-tgttcatgcattaaaattgatgttgacatgcatttactttctgatgcagGAATCACTTGAAAAGATTGCTCCTACATGGATGAATGTCTCGCTGACAATGAAAAACGATCCAGAAACTGATAAGGCATTTGGATGGGTGCTGGAAAT
upper sequence: GLYMA15G37490.2 (Glycine max), 3'ss of exon 4
lower sequence: Vv13s0084g00830.t01 (Vitis vinifera), 3'ss of exon 3
aactatcctaactaactagctcccttactaacggacaacttactaactactaatgggtatctactaatggacttctctctcatttttttctttctttcagGATTTGATCGCAAAGATTGCCCCCACATGGATGAATATTTCTTTGAAGATGAAAGAGGACCCAGAGACTGATAAAGCTTTTGGATGGGTGCTAGAAAT
| | | | | | | ||| | | | | | | | || | | ||| || | | | || || | | | ||||| ||| | | |||||||| || |||||||||||| ||||||||| |||||||| |||||||| |||||||||| ||||||||||||||||||||
atccaaaagccgcactttctttctttatttttttgctccctcatttttttttctgtaaaaatgtgaattacattttggtttacttaattgtcccgtgcagGAGTTGTTGGAGAAGATTGCGCCTACATGGATGAATGTTTCTTTGAGAATGAAAGATGACCCAGAAACTGATAAAGTATTTGGATGGGTGCTAGAAATMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|192294296|gb|FG986385.1|FG986385EST: CAGTTACAAATGTTGATCCAATTGGAAATTCTCCTGTAATTATAAGAAAG GATTTGATCGCAAAGATTGCCCCCACATGGATGAATATTTCTTTGAAGATG
genomic: CAGTTACAAATGTTGATCCAATTGGAAATTCTCCTGTAATTATAAGAAAGgtagaatttc ... tttctttcagGATTTGATCGCAAAGATTGCCCCCACATGGATGAATATTTCTTTGAAGATG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.actactaatgggtatctactaatggacttctctctcatttttttctttctttcagGATTTGATCGCAAAGATTGCCCCCACATGGATGAATATTTCTTTGAAGATGAAAGAGGACCCAGAGACTGATAAAGCTTTTGGATGGGTGCTAGAAAT
tggacttctctctcat CT-rich tract
atttttttctttcttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
aactatcctaactaactagctcccttactaacggacaacttactaactactaatgggtatctactaatggacttctctctcatttttttctttctttcagGATTTGATCGCAAAGATTGCCCCCACATGGATGAATATTTCTTTGAAGATGAAAGAGGACCCAGAGACTGATAAAGCTTTTGGATGGGTGCTAGAAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA