1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tcatatacctgagtggagtttcactttaatatgatatagtcatgatgttaaactgtgattctcaaagatattcaattcctaaccgcaattgcaattgtagGGTTTGATGGAGTTGAGATACATGGGGCACATGGTTTTCTAATTGATCAGTTTTTGAAAGATCAAGTTAACGACAGAACAGACAAATATGGTGGATCCAC
species | Glycine max |
transcript | GLYMA15G35410.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TCATATCGTCAATGACTTCAGGCTTGCTGCAAGGAATGCTATTGAAGCAG GGTTTGATGGAGTTGAGATACATGGGGCACATGGTTTTCTAATTGATCAGTEST: gi|192314881|gb|FK010699.1|FK010699
genomic: TCATATCGTCAATGACTTCAGGCTTGCTGCAAGGAATGCTATTGAAGCAGgtaaataacc ... gcaattgtagGGTTTGATGGAGTTGAGATACATGGGGCACATGGTTTTCTAATTGATCAGT
EST: TCATATCGTCAATGACTTCAGGCTTGCTGCAAGGAATGCTATTGAAGCAG GGTTTGATGGAGTTGAGATACATGGGGCACATGGTTTTCTAATTGATCAGTEST: gi|41146332|gb|CK606543.1|CK606543
genomic: TCATATCGTCAATGACTTCAGGCTTGCTGCAAGGAATGCTATTGAAGCAGgtaaataacc ... gcaattgtagGGTTTGATGGAGTTGAGATACATGGGGCACATGGTTTTCTAATTGATCAGT
EST: TCATATCGTCAATGACTTCAGGCTTGCTGCAAGGAATGCTATTGAAGCAG GGTTTGATGGAGTTGAGATACATGGGGCACATGGTTTTCTAATTGATCAGTEST: gi|151401485|gb|EV271299.1|EV271299
genomic: TCATATCGTCAATGACTTCAGGCTTGCTGCAAGGAATGCTATTGAAGCAGgtaaataacc ... gcaattgtagGGTTTGATGGAGTTGAGATACATGGGGCACATGGTTTTCTAATTGATCAGT
EST: TCATATCGTCAATGACTTCAGGCTTGCTGCAAGGAATGCTATTGAAGCAG GGTTTGATGGAGTTGAGATACATGGGGCACATGGTTTTCTAATTGATCAGT
genomic: TCATATCGTCAATGACTTCAGGCTTGCTGCAAGGAATGCTATTGAAGCAGgtaaataacc ... gcaattgtagGGTTTGATGGAGTTGAGATACATGGGGCACATGGTTTTCTAATTGATCAGT
tgttaaactgtgattctcaaagatattcaattcctaaccgcaattgcaattgtagGGTTTGATGGAGTTGAGATACATGGGGCACATGGTTTTCTAATTGATCAGTTTTTGAAAGATCAAGTTAACGACAGAACAGACAAATATGGTGGATCCAC
tcctaac putative branch site (score: 1)
aaagatattcaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcatatacctgagtggagtttcactttaatatgatatagtcatgatgttaaactgtgattctcaaagatattcaattcctaaccgcaattgcaattgtagGGTTTGATGGAGTTGAGATACATGGGGCACATGGTTTTCTAATTGATCAGTTTTTGAAAGATCAAGTTAACGACAGAACAGACAAATATGGTGGATCCAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
-catatac
- - - - ctgagtg
- - - - - - - - - - - - - - - - - - - gtcatga
- - - - - - - - - - - - - - - - - - - - - - - - - aactgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cctaacc