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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactaattgccgtccttaataaggcaaagtaaaggataattaaaaaaattaatcggtccacagaaattatattgaaagtctaaattaaagtgcttagttttcaattacttgatagtctcaaaagcataatggaatgtaagtgtatatttgcgacttgtagGGACGTTTCAGTTACAAGCCTGGCCAGGCTAGGGCATTTGGAATGATTGCTGGGGGTTCAGGCATAACTCCAATGTTTCAG

Basic information

species Glycine max
transcript GLYMA15G34620.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G34620.1 (Glycine max), 3'ss of exon 4
lower sequence: GRMZM2G133213_T01 (Zea mays), 3'ss of exon 4
gtactaattgccgtccttaataaggcaaagtaaaggataattaaaaaaattaatcggtccacagaaattatattgaaagtctaaattaaagtgcttagt--tttcaattacttgatagtctcaaaagcataatggaatgtaagtgtatatttgcgacttgtagGGACGTTTCAGTTACAAGCCTGGCCAGGCTAGGGCATTTGGAATGATTGCTGGGGGTTCAGGCATAACTCCAATGTTTCAG
                                                            | |   ||| |  | ||| ||||   | ||  || |     ||||  |  | ||    | |        | | |   |  |  |||||  ||      | ||||| || ||||  ||| |   |||||| |  ||||||||||||||| | ||||| || |||||||| |||||||||||||| 
------------------------------------------------------------aaatggattttcctcaaactcta---tgaatcgcctcacaatttctgtaccatgcacatttgccttcagttaggaggttaatatgtattcttctctgatatagGGCCGATTCAAGTACCACGTTGGCCAAGTGAGGGCATTTGGAATGCTGGCTGGTGGATCAGGCATTACTCCAATGTTTCAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13477406|gb|BG507294.1|BG507294
EST:     ATTTTAGACAAATGAAGGAAGGTGATTACTTGGCCGTGAGGGGCCCCAAG                         GGACGTTTCAGNTACAAGCCTTGCCAGGCTAGGTCATTT
genomic: ATTTTAGACAAATGAAGGAAGGTGATTACTTGGCCGTGAGGGGCCCCAAGgtactaattg ... cgacttgtagGGACGTTTCAGTTACAAGCCTGGCCAGGCTAGGGCATTT
EST: gi|15662175|gb|BI699546.1|BI699546
EST:     AAATGAAGGAAGGTGATTACTTGGCCGTGAGGGGCCCCAAG                         GGACGTTTCAGTTACAAGCCTGGCCAGGCTAGGGCATTTGGAATGATTGCT
genomic: AAATGAAGGAAGGTGATTACTTGGCCGTGAGGGGCCCCAAGgtactaattg ... cgacttgtagGGACGTTTCAGTTACAAGCCTGGCCAGGCTAGGGCATTTGGAATGATTGCT
EST: gi|151411830|gb|EV281641.1|EV281641
EST:     ATTTTAGACAAATGAAGGAAGGTGATTACTTGGCCGTGAGGGGCCCCAAG                         GGACGTTTCAGTTACAAGCCTGGCCAGGCTAGGGCATTTGGAATGATTGCT
genomic: ATTTTAGACAAATGAAGGAAGGTGATTACTTGGCCGTGAGGGGCCCCAAGgtactaattg ... cgacttgtagGGACGTTTCAGTTACAAGCCTGGCCAGGCTAGGGCATTTGGAATGATTGCT
EST: gi|4291233|gb|AI441732.1|AI441732
EST:     ATTTTAGACAAATGAAGGAAGGTGATTACTTGGCCGTGAGGGGCCCCAAG                         GGACGTTTCAGTTACAAGCCT
genomic: ATTTTAGACAAATGAAGGAAGGTGATTACTTGGCCGTGAGGGGCCCCAAGgtactaattg ... cgacttgtagGGACGTTTCAGTTACAAGCCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tacttgatagtctcaaaagcataatggaatgtaagtgtatatttgcgacttgtagGGACGTTTCAGTTACAAGCCTGGCCAGGCTAGGGCATTTGGAATGATTGCTGGGGGTTCAGGCATAACTCCAATGTTTCAG
 acttgat  putative branch site (score: 5)
                                   tgtatattt  TA-rich tract