1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tcactattataatgtttattatgtaattattattatcctatgctaacattaaatgggtcaatccctaattgaaatattcgtttggtttgtggaatgacagACAGACAAGGCATCCATGCTAGATGAGATCATCGATTACGTGAAGTTCCTGCAGCTCCAAGTCAAG
species | Glycine max |
transcript | GLYMA15G33020.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TCGCCGAGAGAATGAAGGCCCTACAAGAACTGGTTCCCAATGCCAACAAG ACAGACAAGGCATCCATGCTAGATGAGATCATCGATTACGTGAAGTTCCTGEST: gi|8283977|gb|BE021536.1|BE021536
genomic: TCGCCGAGAGAATGAAGGCCCTACAAGAACTGGTTCCCAATGCCAACAAGgtaaaatgcc ... ggaatgacagACAGACAAGGCATCCATGCTAGATGAGATCATCGATTACGTGAAGTTCCTG
EST: TCGCCGAGAGAATGAAGGCCCTACAAGAACTGGTTCCCAATGCCAACAAG ACAGACAAGGCATCCATGCTAGATGAGATCATCGATTACGTGAAGTTCCTGEST: gi|20449607|gb|BQ253731.1|BQ253731
genomic: TCGCCGAGAGAATGAAGGCCCTACAAGAACTGGTTCCCAATGCCAACAAGgtaaaatgcc ... ggaatgacagACAGACAAGGCATCCATGCTAGATGAGATCATCGATTACGTGAAGTTCCTG
EST: TCGCCGAGAGAATGAAGGCCCTACAAGAACTGGTTCCCAATGCCAACAAG ACAGACAAGGCATCCATGCTAGATGAGATCATCGATTACGTGAAGTTCCTG
genomic: TCGCCGAGAGAATGAAGGCCCTACAAGAACTGGTTCCCAATGCCAACAAGgtaaaatgcc ... ggaatgacagACAGACAAGGCATCCATGCTAGATGAGATCATCGATTACGTGAAGTTCCTG
acattaaatgggtcaatccctaattgaaatattcgtttggtttgtggaatgacagACAGACAAGGCATCCATGCTAGATGAGATCATCGATTACGTGAAGTTCCTGCAGCTCCAAGTCAAG
taattgaaatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcactattataatgtttattatgtaattattattatcctatgctaacattaaatgggtcaatccctaattgaaatattcgtttggtttgtggaatgacagACAGACAAGGCATCCATGCTAGATGAGATCATCGATTACGTGAAGTTCCTGCAGCTCCAAGTCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - cctatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - caatccc