1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...gagattatttttttgattatttctccaaaaaatcaacttccaaacatgtcctaagtttttcccttgattcttttaattgggttgttgatgctctatttagGATGCAAATGGAGGTGCAGAGAAGATTGCATGAACAACTAGAG
species | Glycine max |
transcript | GLYMA15G29620.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CAAAGAAATATCGGCTCCTCTTCTGCCATGATTGGCCGCAACATGAACGA GATGCAAATGGAGGTGCAGAGAAEST: gi|21676951|gb|BQ629302.1|BQ629302
genomic: CAAAGAAATATCGGCTCCTCTTCTGCCATGATTGGCCGCAACATGAACGAgtatgcttag ... ctctatttagGATGCAAATGGAGGTGCAGAGAA
EST: CAAAGAAATATCGGCTCCTCTTCTGCCATGATTGGCCGCAACATGAACGA GATGCAAATGGAGGTGCAGAGAAGATTGCATGAACAACTAGAG
genomic: CAAAGAAATATCGGCTCCTCTTCTGCCATGATTGGCCGCAACATGAACGAgtatgcttag ... ctctatttagGATGCAAATGGAGGTGCAGAGAAGATTGCATGAACAACTAGAG
atgtcctaagtttttcccttgattcttttaattgggttgttgatgctctatttagGATGCAAATGGAGGTGCAGAGAAGATTGCATGAACAACTAGAG
ctctattt CT-rich tract
ttgattcttttaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gagattatttttttgattatttctccaaaaaatcaacttccaaacatgtcctaagtttttcccttgattcttttaattgggttgttgatgctctatttagGATGCAAATGGAGGTGCAGAGAAGATTGCATGAACAACTAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - ctccaaa
- - - - - - - - - - - - - - - - - - - -ccaaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgggttg