Sequence
atgc intronic sequence ATGC exonic sequence...cataattgttcattgcctctattggataatctgcatatctttgttaagaagaaaatttgaaacaagataaattattaatggtgtttcaatttttttccagCAATATGGTGATATTAGAACCCTATATACTGCATGCAAACATCGGGGATTTGTAATGATATCCTATTATGATATCCGTGCTGCTCGAACAGCTATGCGTG
Basic information
species | Glycine max |
transcript | GLYMA15G23420.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA15G23420.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv10s0003g02670.t01 (Vitis vinifera), 3'ss of exon 4
cataattgttcattgcctctattggataatctgcatatctttgttaaga----agaaaatttgaaacaagataaattattaatggtgtttcaatttttttcc----agCAATATGGTGATATTAGAACCCTATATACTGCATGCAAACATCGGGGATTTGTAATGATATCCTATTATGATATCCGTGCTGCTCGAACAGCTATGCGTG
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--------tacccagattctacagtttatttcatattcatgtactagcattttgttatctttagtacacaaataattgtcctagttgatgaaccttttcttttggtagCAATATGGCGCGATCAGAACTTTGTACACTGCATGTAAACATAGGGGCTTTGTGATGATATCTTACTATGACATCCGTGCTGCGCGAACTGCTATGCGTG
upper sequence: GLYMA15G23420.1 (Glycine max), 3'ss of exon 4
lower sequence: EFJ29695 (Selaginella moellendorffii), 3'ss of exon 1
cataattgttcattgcctctattggataatctgcatatctttgttaagaagaaaatttgaaacaagataaattattaatggtgtttcaatttttttccagCAATATGGTGATATTAGAACCCTATATACTGCATGCAAACATCGGGGATTTGTAATGATATCCTATTATGATATCCGTGCTGCTCGAACAGCTATGCGTG
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------------------------gtgaggctgcatttgttttcggttttcttgagcgcgcgtgacacacgttttggtttttaccttctcttcttttaagCAATATGGTGATATTCGTACGCTGTATACCGCTTGTAAACACCGCGGATTTGTGATGATATCGTATTACGACATCCGGGCTGCCCGGAGTGCCATGCGTG
upper sequence: GLYMA15G23420.1 (Glycine max), 3'ss of exon 4
lower sequence: EFJ16044 (Selaginella moellendorffii), 3'ss of exon 1
cataattgttcattgcctctattggataatctgcatatctttgttaagaagaaaatttgaaacaagataaattattaatggtgtttcaatttttttccagCAATATGGTGATATTAGAACCCTATATACTGCATGCAAACATCGGGGATTTGTAATGATATCCTATTATGATATCCGTGCTGCTCGAACAGCTATGCGTG
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---------------------------------------gtactcgtggtccacctttg---catggcg--ccattgacaacgttctatacgtttcacagATTTACGGGGACATTCGTACGTTATACACCGCTTGCAAACATCGTGGATTTGTAATGATTTCCTACTATGATATACGATCTGCTAGAACTGCTATGCGTGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|193677718|gb|FK617464.1|FK617464EST: GTGGAGGACTCAGAGCTGAGAGCCCTTTTTGAG CAATATGGTGATATTAGAACCCTATATACTGCATGCAAACATCGGGGATTT
genomic: GTGGAGGACTCAGAGCTGAGAGCCCTTTTTGAGgtaagttgaa ... ttttttccagCAATATGGTGATATTAGAACCCTATATACTGCATGCAAACATCGGGGATTT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aagaagaaaatttgaaacaagataaattattaatggtgtttcaatttttttccagCAATATGGTGATATTAGAACCCTATATACTGCATGCAAACATCGGGGATTTGTAATGATATCCTATTATGATATCCGTGCTGCTCGAACAGCTATGCGTG
tattaat putative branch site (score: 2)
tttcaatttttttcc putative PPT
ataaattattaatggt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
cataattgttcattgcctctattggataatctgcatatctttgttaagaagaaaatttgaaacaagataaattattaatggtgtttcaatttttttccagCAATATGGTGATATTAGAACCCTATATACTGCATGCAAACATCGGGGATTTGTAATGATATCCTATTATGATATCCGTGCTGCTCGAACAGCTATGCGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - cattgcc
- - - - - - - - - ctattgg
- - - - - - - - - - - - - - - -tgcatat
- - - - - - - - - - - - - - - - - - - - - - - - aagaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aagataaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aatggtg