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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtgtataatatgatttttttttaaattttcaacttttgaaaggaaatcaggctaggaggatgatgtatcaaatattcaaatcttaccaaattgtagtcatgatagcttgacatgtactgtgcaattaattctgaagttcttttcctgttgcttatggttctagTTATGTATTGGGAGCTGTAGAAACATTTTTGAAAGCAGTTCCTTCTGCTGGGATTTTTAGAG

Basic information

species Glycine max
transcript GLYMA15G22520.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G22520.1 (Glycine max), 3'ss of exon 4
lower sequence: LOC_Os08g23440.1 (Oryza sativa), 3'ss of exon 7
gtaagtgtataatatgatttttttttaaattttcaacttttgaaaggaaatcaggctaggaggatgatgtatcaaatattcaaatcttaccaaattgtagtcatgatagcttgacatgtactgtgcaattaattctgaagttcttttcctgttgcttatggttctagTTATGTATTGGGAGCTGTAGAAACATTTTTGAAAGCAGTTCCTTCTGCTGGGATTTTTAGAG
                                                                | || | |||  ||| |  |  ||  ||     | | ||     |  ||  | || |||| |  ||   |||   ||   |  | | || ||     ||  || |||||  | |||||||||||||| |||||| | |||||||||||||||||  |||||| ||
---------------------------------------------------------------ttcatctttcatttatccgtaattttgcatgcattcg-cacatgggtctgtgacgt-ctgtccccttttctctct-gtgtctaacttatt-ctgtcattttcagGTATGTGCTAGGAGCTGTAGAAACCTTTTTGGATGCAGTTCCTTCTGCTGGTTTTTTTAAAG

upper sequence: GLYMA15G22520.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv10s0003g04530.t01 (Vitis vinifera), 3'ss of exon 6
gtaagtgtataatatgatttttttttaaattttcaacttttgaaaggaaatcaggctaggaggatgatgtatcaaatattcaaatcttaccaaattgtagtcatgatagcttgacatgtactgtgcaattaattctgaagttctt----ttcctgttgcttatggttctagTTATGTATTGGGAGCTGTAGAAACATTTTTGAAAGCAGTTCCTTCTGCTGGGATTTTTAGAG
|| |||| ||  |   |||  || | |     |     |||| | |     | ||||| || ||| |   |    ||  |   ||   |      | |  |  |||  |||  ||   || ||    | ||||       | |||    ||||  |||||| |||||||||||||||  |||||||||||||||| || ||  | ||  | ||   ||||||||||||| |||
gtgagtgaatt-tgaaattgattatgatgacatgggtatttgcatgtttgac-ggctatgatgatcacaaaaatgatgcttgcata--aatgtgatattctgttgaaggctcaactattaatgctgtactaatgtcattatccttacctttccatttgcttgtggttctagTTATGTGCTGGGAGCTGTAGAAACCTTCTTAGATGCCTTGCCAGGTGCTGGGATTTTTGGAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gacatgtactgtgcaattaattctgaagttcttttcctgttgcttatggttctagTTATGTATTGGGAGCTGTAGAAACATTTTTGAAAGCAGTTCCTTCTGCTGGGATTTTTAGAG
              aattaat  putative branch site (score: 3)
              aattaattct  TA-rich tract