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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttagaaataaatcgatatcttgtattcaattatttatgttaaatatgccaggttcatagtttggaggatactaaccctgtcttatcctctggttgtgatagGTCTGAGAGCAGCATACAGAGGCTAATCAAGTTGCGAAATTCTGCAATGCGTTCATACCAAGAGTACAAAATTCCAACTGCTTGGATGCTTGATTCAGGA

Basic information

species Glycine max
transcript GLYMA15G21040.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G21040.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv05s0020g00920.t01 (Vitis vinifera), 3'ss of exon 5
gtttaga----aataaatcgatatcttgtattcaattatttatgttaaatatgccaggttcatagtttggaggatactaaccctgtctta---tcctctggttgtgatagGTCTGAGAGCAGCATACAGAGGCTAATCAAGTTGCGAAATTCTGCAATGCGTTCATACCAAGAGTACAAAATTCCAACTGCTTGGATGCTTGATTCAGGA
|| |  |     | ||| | | || ||  |||    |  |||    | |        |||  || |    || |   | |   || |||    || |||| |  ||  |||||||| || |||||||| ||| | || ||| |||| || ||||   |||| || || || || |    ||||||||||| |||||||||||||||||||
gtatgaactatgagaaaacaaaatttt--atttgtcttcttagtccagaggcatgccgtttttattagtcagaaatttgattttggctttcattcatctgttgttgcaagGTCTGAAAGAAGCATACAAAGGTTGATTAAGCTGCGGAACTCTGTTGTGCGGTCTTATCAGGAATGTGGAATTCCAACTGGTTGGATGCTTGATTCAGGA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gccaggttcatagtttggaggatactaaccctgtcttatcctctggttgtgatagGTCTGAGAGCAGCATACAGAGGCTAATCAAGTTGCGAAATTCTGCAATGCGTTCATACCAAGAGTACAAAATTCCAACTGCTTGGATGCTTGATTCAGGA
                      tactaac  putative branch site (score: 0)
         atagttt  TA-rich tract