Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...taaattttgattttgatgttgctgctggctgtcttccctttgtcatatgtccaagcaaagttggagtatatccttattgttatgtttattttggctgcagATTTTTAATGGCGTCTTTCTTAAAGTGAACAAAGCTACAGTGAATATGCTCCATAGGGTAGAGCCTTATGTTACCTATGG

Basic information

species Glycine max
transcript GLYMA15G18170.2
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G18170.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv09s0054g00140.t01 (Vitis vinifera), 3'ss of exon 2
--taaattttgattttgatgttgct-gctggctgtcttccctttgtcatatgtc-caagcaaagttggagtatatccttattgttatgtttattttggctgcagATTTTTAATGGCGTCTTTCTTAAAGTGAACAAAGCTACAGTGAATATGCTCCATAGGGTAGAGCCTTATGTTACCTATGG
     ||  |||  ||  |  |    ||  ||| ||  || || |  | |||       |   | ||   ||    ||| |  ||   ||   ||||  | ||||| || ||||| || |||||||||||||||||||| ||| |||| ||| | || ||||| ||||||||||| || |||||
ctcttatcatgagcttactaatctaagcaagctatc--ccattagaaaaatggagtgttctttgatgacataagatcttctcattcacttc--tttgaatacagATATTCAATGGGGTGTTTCTTAAAGTGAACAAAGCAACAATGAACATGTTGCACAGGGTTGAGCCTTATGTGACTTATGG

upper sequence: GLYMA15G18170.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv11s0052g00290.t01 (Vitis vinifera), 3'ss of exon 4
---taaattttgattttgatgttgctgctggctgtcttccctttgtcatatgtccaagcaaagttggagtatatccttattgttatgtttattttggctgcagATTTTTAATGGCGTCTTTCTTAAAGTGAACAAAGCTACAGTGAATATGCTCCATAGGGTAGAGCCTTATGTTACCTATGG
       ||||  || || | | | || || |    ||   |||  | | |  ||   || | | | |||   |  |||     || | | || ||| | ||||| |||||||| |||||||| ||||| ||||| || ||| |||||||||| || ||||| ||||||||||| || || ||
catgtggttttccttgtgttttagttg-tgtcaaagttattttttccttgttaccttacagattcgtagt-cgtatttaaaagaat-tcttttatggtttcagATATTTAATGGTGTCTTTCTGAAAGTAAACAAGGCAACAATGAATATGCTGCACAGGGTTGAGCCTTATGTGACATACGG

upper sequence: GLYMA15G18170.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv09s0054g00030.t01 (Vitis vinifera), 3'ss of exon 3
--taaattttgattttgatgttgct-gctggctgtcttccctttgtcatatgtc-caagcaaagttggagtatatccttattgttatgtttattttggctgcagATTTTTAATGGCGTCTTTCTTAAAGTGAACAAAGCTACAGTGAATATGCTCCATAGGGTAGAGCCTTATGTTACCTATGG
     ||  |||  ||  |  |    ||  ||| ||  || || |  | |||       |   | ||   ||    ||| |  ||   ||   ||||  | ||||| || ||||| || ||||||||||||||| |||| ||| |||| ||| | || ||||| ||||||||||| || |||||
ctcttatcatgagcttactaatctaagcaagctatc--ccattagaaaaatggagtgttctttgatgacataagatcttctcattcacttc--tttgaatacagATATTCAATGGGGTGTTTCTTAAAGTGAACGAAGCAACAATGAACATGTTGCACAGGGTTGAGCCTTATGTGACTTATGG

upper sequence: GLYMA15G18170.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv09s0054g00060.t01 (Vitis vinifera), 3'ss of exon 3
--taaattttgattttgatgttgct-gctggctgtcttccctttgtcatatgtc-caagcaaagttggagtatatccttattgttatgtttattttggctgcagATTTTTAATGGCGTCTTTCTTAAAGTGAACAAAGCTACAGTGAATATGCTCCATAGGGTAGAGCCTTATGTTACCTATGG
     ||  |||  ||  |  |    ||  ||| ||  || || |  | |||       |   | ||   ||    ||| |  ||   ||   ||||  | ||||| || ||||| || |||||||||||||||||||| ||| |||| | | | || ||||| ||||||||||| || |||||
ctcttatcatgagcttactaatctaagcaagctatc--ccattagaaaaatggagtgttctttgatgacataagatcttctcattcacttc--tttgaatacagATATTCAATGGGGTGTTTCTTAAAGTGAACAAAGCAACAATGAACAAGTTGCACAGGGTTGAGCCTTATGTGACTTATGG

upper sequence: GLYMA15G18170.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv09s0054g00010.t01 (Vitis vinifera), 3'ss of exon 3
taaattttgattttgatgttgctg--ctggctgtcttccctttgtcatatgtccaagcaaagttggagtatatcct-tattgttatgt-ttattttggctgcagATTTTTAATGGCGTCTTTCTTAAAGTGAACAAAGCTACAGTGAATATGCTCCATAGGGTAGAGCCTTATGTTACCTATGG
     | | ||  |||  || ||   ||        |  |    |   |      ||     || ||  ||||    | || | ||    |  ||||  | ||||| || ||||| || |||||||||||||||||||| ||| |||| ||| | || ||||| ||||||||||| || |||||
----ctcttatcatgagcttactaatctaagcaagctatcccattagaaaaatggagtgttctttgatgatataaggtcttctcattcacttctttgaatacagATATTCAATGGGGTGTTTCTTAAAGTGAACAAAGCAACAATGAACATGTTGCACAGGGTTGAGCCTTATGTGACTTATGG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8282865|gb|BE020426.1|BE020426
EST:     CCATGGATCCCAAAACAAGGAAGATTCTGCAGCTTCTGCGTTTGAGACAG                         ATTTTTAATGGCGTCTTTCTTAAAGTGAACAAAGCTACAGTGAATATGCTC
genomic: CCATGGATCCCAAAACAAGGAAGATTCTGCAGCTTCTGCGTTTGAGACAGgtaactgctt ... ttggctgcagATTTTTAATGGCGTCTTTCTTAAAGTGAACAAAGCTACAGTGAATATGCTC
EST: gi|17023603|gb|BM094637.1|BM094637
EST:     CCATGGATCCCAAAACAAGGAAGATTCTGCAGCTTCTGCGTTTGAGACAG                         ATTTTTAATGGCGTCTTTCTTAAAGTGAACAAAGCTACAGTGAATATGCTC
genomic: CCATGGATCCCAAAACAAGGAAGATTCTGCAGCTTCTGCGTTTGAGACAGgtaactgctt ... ttggctgcagATTTTTAATGGCGTCTTTCTTAAAGTGAACAAAGCTACAGTGAATATGCTC
EST: gi|298195246|gb|HO043774.1|HO043774
EST:     CCATGGATCCTAAAACAAGGAAGATTCTGCAGCTTCTGCGTTTGAGACAG                         ATTTTTAATGGCGTCCTTCTTAAAGTGAACAAAGCTACAGTGAATATGCTC
genomic: CCATGGATCCCAAAACAAGGAAGATTCTGCAGCTTCTGCGTTTGAGACAGgtaactgctt ... ttggctgcagATTTTTAATGGCGTCTTTCTTAAAGTGAACAAAGCTACAGTGAATATGCTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatgtccaagcaaagttggagtatatccttattgttatgtttattttggctgcagATTTTTAATGGCGTCTTTCTTAAAGTGAACAAAGCTACAGTGAATATGCTCCATAGGGTAGAGCCTTATGTTACCTATGG
                                       tttatttt  CT-rich tract
                            ttattgttatgtttat  TA-rich tract