1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...atgatgtctttatgatcattctttttaattttccctgcatataagttctacttcttttgtactaattgttttcttaatattttgttttgcttttgtacagAATTATTTTCCCTTCAGTTCCCATTGGCTCTGGTAGTGATCTTGTTCCAGGGCCTGCTGCTGGAGTGTTTCCTTCAAG
species | Glycine max |
transcript | GLYMA15G17840.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ATACCTGACCCTGTTGCTGGATTTGGTGAACCTGCTGATCCTCCAACTCA NATTATTTTCCCTTCAGTTCCCATTGGCTCTGGTAGTGATCTTGTTCEST: gi|23728829|gb|BU762478.1|BU762478
genomic: ATACCTGACCCTGTTGCTGGATTTGGTGAACCTGCTGATCCTCCAACTCAgtaagggttt ... ttttgtacagAATTATTTTCCCTTCAGTTCCCATTGGCTCTGGTAGTGATCTTGTTC
EST: CTACCTGACCCTGTTGCTGGATTTGGTGAACCTGCTGATCCTCCAACTCA AATTATTTTCCCTTCAGTTCCCATTGGCTCTGGTAGTGATCTTGTTCCTGGEST: gi|151408833|gb|EV278641.1|EV278641
genomic: ATACCTGACCCTGTTGCTGGATTTGGTGAACCTGCTGATCCTCCAACTCAgtaagggttt ... ttttgtacagAATTATTTTCCCTTCAGTTCCCATTGGCTCTGGTAGTGATCTTGTTCCAGG
EST: ATACCTGACCCTGTTGCTGGATTTGGTGAACCTGCTGATCCTCCAACTCA AATTATTTTCCCTTCAGTTCCCATTGGCTCTGGTAGTGATCTTGTTCCAGGEST: gi|15204141|gb|BI426909.1|BI426909
genomic: ATACCTGACCCTGTTGCTGGATTTGGTGAACCTGCTGATCCTCCAACTCAgtaagggttt ... ttttgtacagAATTATTTTCCCTTCAGTTCCCATTGGCTCTGGTAGTGATCTTGTTCCAGG
EST: CTACCTGACCCTGTTGCTGGATTTGGTGAACCTGCTGATCCTCCAACTCA AATTATTTTCCCTTCAGTTCCCATTGGCTCTGGTAGTGATCTTGTTCCTGGEST: gi|151401061|gb|EV270875.1|EV270875
genomic: ATACCTGACCCTGTTGCTGGATTTGGTGAACCTGCTGATCCTCCAACTCAgtaagggttt ... ttttgtacagAATTATTTTCCCTTCAGTTCCCATTGGCTCTGGTAGTGATCTTGTTCCAGG
EST: ATACCTGACCCTGTTGCTGGATTTGGTGAACCTGCTGATCCTCCAACTCA AATTATTTTCCCTTCAGTTCCCATTGGCTCTGGTAGTGATCTTGTTEST: gi|15813617|gb|BI785892.1|BI785892
genomic: ATACCTGACCCTGTTGCTGGATTTGGTGAACCTGCTGATCCTCCAACTCAgtaagggttt ... ttttgtacagAATTATTTTCCCTTCAGTTCCCATTGGCTCTGGTAGTGATCTTGTT
EST: ATACCTGACCCTGTTGCTGGATTTGGTGAACCTGCTGATCCTCCAACTCA AATTATTTTCCCTTCAGTTCCCATTGGCTCTGGTAGTGATCTTGTTCCAGGEST: gi|33389848|gb|CA853055.1|CA853055
genomic: ATACCTGACCCTGTTGCTGGATTTGGTGAACCTGCTGATCCTCCAACTCAgtaagggttt ... ttttgtacagAATTATTTTCCCTTCAGTTCCCATTGGCTCTGGTAGTGATCTTGTTCCAGG
EST: ATACCTGACCCTGTTGCTGGATTTGGTGAACCTGCTGATCCTCCAACTCA AATTATTTTCCCTTCAGTTCCCATTGGCTCTGGTAGTGATCTTGTTCCAGGEST: gi|31310074|gb|CD395277.1|CD395277
genomic: ATACCTGACCCTGTTGCTGGATTTGGTGAACCTGCTGATCCTCCAACTCAgtaagggttt ... ttttgtacagAATTATTTTCCCTTCAGTTCCCATTGGCTCTGGTAGTGATCTTGTTCCAGG
EST: ATACCTGACCCTGTTGCTGGATTTGGTGAACCTGCTGATCCTCCAACTCA AATTATTTTCCCTTCAGTTCCCATTGGCTCTGGTAGTGATCTTGTTCCAGG
genomic: ATACCTGACCCTGTTGCTGGATTTGGTGAACCTGCTGATCCTCCAACTCAgtaagggttt ... ttttgtacagAATTATTTTCCCTTCAGTTCCCATTGGCTCTGGTAGTGATCTTGTTCCAGG
ttctacttcttttgtactaattgttttcttaatattttgttttgcttttgtacagAATTATTTTCCCTTCAGTTCCCATTGGCTCTGGTAGTGATCTTGTTCCAGGGCCTGCTGCTGGAGTGTTTCCTTCAAG
ttttgttttgctttt CT-rich tract
ttttgtactaattgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgatgtctttatgatcattctttttaattttccctgcatataagttctacttcttttgtactaattgttttcttaatattttgttttgcttttgtacagAATTATTTTCCCTTCAGTTCCCATTGGCTCTGGTAGTGATCTTGTTCCAGGGCCTGCTGCTGGAGTGTTTCCTTCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
-tgatgtc
- - - - - - - - - - - - - - - - ccctgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgttttg