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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatattgatacatgaatgtggtagtgctgaaatttcttgttttggaattttgaccgagcttgcctgaatactatatctttgaaattccagGCAGTATGGGCGTTGGGAAATGTTGCTGGTGACTCCCCAAGGTGTCGTGATCTTGTTCTTAGTCACGGTGCCCTGATCCCATTGTTGGCCCAGTTGAATG

Basic information

species Glycine max
transcript GLYMA15G15480.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G15480.1 (Glycine max), 3'ss of exon 4
lower sequence: LOC_Os01g14950.1 (Oryza sativa), 3'ss of exon 4
----------gtatattgatacatgaatgtggtagtgctgaaatttcttgttttggaattttgaccgagc---ttgcctgaatact--atatctttg------------aaattccagGCAGTATGGGCGTTGGGAAATGTTGCTGGTGACTCCCCAAGGTGTCGTGATCTTGTTCTTAGTCACGGTGCCCTGATCCCATTGTTGGCCCAGTTGAATG
           | |  |||    |   |||| |  | ||| | || |||| | |   |||||||  |||    |||   || |  |  || | |||             |||||  |||| |||||||| ||||| |||||||||||||| ||||| | ||| ||||| |||||||||    | |||||  || | ||  || | || ||||||||||
gtatccgatcatctcctgacttgtctttgtgct--ttctgtacttccttgatatt--attttgattgagtgcattgttggagttattaatgtttttacctcttgaaaaaaaattgaagGCTGTATGGGCATTGGGCAATGTTGCTGGTGATTCCCCTAAGTGCCGTGACCTTGTTCTTGCCAATGGTGCATTGCTGCCTCTGCTAGCACAGTTGAATG

upper sequence: GLYMA15G15480.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv05s0077g01430.t01 (Vitis vinifera), 3'ss of exon 4
--gtatatt-gatacatgaatgtggta-gtgctgaaatttcttgttttggaattttgaccgagcttgcctgaatactatatctt---tgaaattcc------------agGCAGTATGGGCGTTGGGAAATGTTGCTGGTGACTCCCCAAGGTGTCGTGATCTTGTTCTTAGTCACGGTGCCCTGATCCCATTGTTGGCCCAGTTGAATG
  |  |||| || |  ||  ||  |   ||  | | ||| |    | |  |   || |  |   |  | |  || | |  | ||   |||||| |             |||| || ||||| ||||||||||||||||||||||| || || || ||||||||||| ||| |||| || ||| |||| |||||| | || ||||||||||
gtgcttatttgaaatttgtttgaagcccgttttaagattgcagactgtatatcatttattggcataacatagattcgaggttttatatgaaatcctttaccaaaatgtagGCTGTCTGGGCTTTGGGAAATGTTGCTGGTGACTCACCCAGATGCCGTGATCTTGTCCTTGGTCATGGGGCCTTGATTCCATTGCTAGCACAGTTGAATG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttgttttggaattttgaccgagcttgcctgaatactatatctttgaaattccagGCAGTATGGGCGTTGGGAAATGTTGCTGGTGACTCCCCAAGGTGTCGTGATCTTGTTCTTAGTCACGGTGCCCTGATCCCATTGTTGGCCCAGTTGAATG
            ttttgac  putative branch site (score: 3)
                                    tatatctttgaaatt  TA-rich tract