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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tatatcatatcatttggctatcatgcctacatgattgtttgttctttggttcttggtgtttactactttatgtgaatcttgagttttctgaaaatctcagGGAGTCCAATGCAAGAGAGTTGCAAGAAGTATTAACTCCGTGGGTCTTTATGTTCCAGGGGGAACTGCTGTATTACCTTCAACAGCTTTGATGCTTGCAG

Basic information

species Glycine max
transcript GLYMA15G13910.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G13910.2 (Glycine max), 3'ss of exon 4
lower sequence: Vv18s0166g00300.t01 (Vitis vinifera), 3'ss of exon 6
tatatcatatcatttggctatcatgcctacatgattgtttgttc-tttggttcttggtgtttactactttatgtgaatcttgagttttctgaaaatctcagGGAGTCCAATGCAAGAGAGTTGCAAGAAGTATTAACTCCGTGGGTCTTTATGTTCCAGGGGGAACTGCTGTATTACCTTCAACAGCTTTGATGCTTGCAG
        | ||   |  |||         || || |||  ||| |     |  | |    || |   || |   | || ||| ||||          ||||| ||  |||||||  | |||||||| || |||   || || ||||||||||||||||| |||||||| || ||||||||||||||| |||||||| |||
-----gtaagcaagagaatattgaatgctaattatggttgattcatcctacttctagcccatatttactttttctattcctgattttttc--------cagGGTGTTAAATGCAAACGGGTTGCAAGGAGCATTGCTTCTGTTGGTCTTTATGTTCCAGGAGGAACTGCAGTGTTACCTTCAACAGCTCTGATGCTTTCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9819508|gb|BE555021.1|BE555021
EST:     ATTTCATGCTGCTCAGAAG-CACCCCGAGAAA-GTGTTGAGAACATGAAA                         GGAGCCCA-TGCAAGAGAGTTGCAAGAAG-ATTAACTTCGTGGGTCTT-AT
genomic: ATTTCATGCTGCTCAGAAGTCACCC-GAGAAAAGTGTTGAGAACATGAAAgtatgtcagt ... aaaatctcagGGAGTCCAATGCAAGAGAGTTGCAAGAAGTATTAACTCCGTGGGTCTTTAT
EST: gi|20811785|gb|BQ296263.1|BQ296263
EST:     CATTTCATGCTGCTCAGAAGTCACCCGAGAAAAGTGTTGAGAACATGAAA                         GGAGTCCAATGCAAGAGAGTTGCAAGAAGTATTAACTCCGTGGGTCTTTAT
genomic: CATTTCATGCTGCTCAGAAGTCACCCGAGAAAAGTGTTGAGAACATGAAAgtatgtcagt ... aaaatctcagGGAGTCCAATGCAAGAGAGTTGCAAGAAGTATTAACTCCGTGGGTCTTTAT
EST: gi|254340468|gb|GR850770.1|GR850770
EST:     CATTTCATGCTGCTCAGAAGTCACCCGAGAAAAGTGTTGAGAACATGAAA                         GGAGTCCAATGCAAGAGAGTTGCAAGAAGTATTAACTCCGTGGGTCTTTAT
genomic: CATTTCATGCTGCTCAGAAGTCACCCGAGAAAAGTGTTGAGAACATGAAAgtatgtcagt ... aaaatctcagGGAGTCCAATGCAAGAGAGTTGCAAGAAGTATTAACTCCGTGGGTCTTTAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttggttcttggtgtttactactttatgtgaatcttgagttttctgaaaatctcagGGAGTCCAATGCAAGAGAGTTGCAAGAAGTATTAACTCCGTGGGTCTTTATGTTCCAGGGGGAACTGCTGTATTACCTTCAACAGCTTTGATGCTTGCAG
                  tactttat  TA-rich tract