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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaatatgttttgcttagagtttggatgcatttgattagtgattttgaaaatattgtgtaccttatactttttcttcttctcttgtctacagGAATGCAAAGCAACAGATAAAGGGGGGAAATATTATGATTTCTGGCAAAACACTAGATCTGTGAAGTCAACAATACTTCATTTCCAA

Basic information

species Glycine max
transcript GLYMA15G12980.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G12980.2 (Glycine max), 3'ss of exon 3
lower sequence: Vv00s0568g00010.t01 (Vitis vinifera), 3'ss of exon 3
gtaaatatgttttgcttagagtttggatgcatttgattagtgattttgaaaatattgtgtaccttatactttttcttcttctc--ttgtctac-agGAATGCAAAGCAACAGATAAAGGGGGGAAATATTATGATTTCTGGCAAAACACTAGATCTGTGAAGTCAACAATACTTCATTTCCAA
      || |||| | |||  | | |  | ||   | | ||  || | | | ||     |  || | |||| | ||| ||||   ||   |   |||| ||||| |  ||| | ||||| ||    |||||||| ||||||| |||||| ||||||||||| || || || ||||||||||||
---gtaatattttccctaggttctagtggtataacact-gtacttataatagtacatactttctcacacttgtcctttttcttatttacttgttagGAGTGCAAGGTCACAAAGAAAGGTGGAGCTTATTATGAATTCTGGCGAAACACAAGATCTGTGAAATCGACCATCCTTCATTTCCAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192303675|gb|FG998657.1|FG998657
EST:     AGTACAAGAATTATGAAAACATACCACAATCAGGGGAAATGTCAGAGAAG                         GAATGCAAAGCAACAGATAAAGGGGGGAAATATTATGATTTCTGGCAAAAC
genomic: AGTACAAGAATTATGAAAACATACCACAATCAGGGGAAATGTCAGAGAAGgtaaatatgt ... ttgtctacagGAATGCAAAGCAACAGATAAAGGGGGGAAATATTATGATTTCTGGCAAAAC
EST: gi|192295897|gb|FG992663.1|FG992663
EST:     AGTACAAGAATTATGAAAACATACCACAATCAGGGGAAATGTCAGAGAAG                         GAATGCAAAGCAACAGATAAAGGGGGGAAATATTATGATTTCTGGCAAAAC
genomic: AGTACAAGAATTATGAAAACATACCACAATCAGGGGAAATGTCAGAGAAGgtaaatatgt ... ttgtctacagGAATGCAAAGCAACAGATAAAGGGGGGAAATATTATGATTTCTGGCAAAAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agtgattttgaaaatattgtgtaccttatactttttcttcttctcttgtctacagGAATGCAAAGCAACAGATAAAGGGGGGAAATATTATGATTTCTGGCAAAACACTAGATCTGTGAAGTCAACAATACTTCATTTCCAA
                     taccttatactttttc  CT-rich tract
     ttttgaaaatattgt  TA-rich tract