1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtactaataatgaaattccaccaaggagtgaattgtgcaaaatgagaatactaacgtttattttgcattcagATTGCATCACTACAAGAAGATAAGAAAGCTTTGGAACGACTCACAAAGTCAAAAGAGGCAGCATTGCTTGAAGCAGAGAAGATTTTAAGAAGTGCACTAG
species | Glycine max |
transcript | GLYMA15G12490.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AGAGTGTCATTACTCCTCTTGAAGCTGAGATTAAGATGTATAGGAATGAG ATTGCATCACTACAAGAAGEST: gi|192294597|gb|FG986446.1|FG986446
genomic: AGAGTGTCATTACTCCTCTTGAAGCTGAGATTAAGATGTATAGGAATGAGgtactaataa ... ttgcattcagATTGCATCACTACAAGAAG
EST: AGAGTGTCATTACTCCTCTTGAAGCTGAGATTAAGATGTATAGGAATGAG ATTGCATCACTACAAGAAGATAAGAAAGCTTTGGAACGACTCACAAAGTCA
genomic: AGAGTGTCATTACTCCTCTTGAAGCTGAGATTAAGATGTATAGGAATGAGgtactaataa ... ttgcattcagATTGCATCACTACAAGAAGATAAGAAAGCTTTGGAACGACTCACAAAGTCA
ccaccaaggagtgaattgtgcaaaatgagaatactaacgtttattttgcattcagATTGCATCACTACAAGAAGATAAGAAAGCTTTGGAACGACTCACAAAGTCAAAAGAGGCAGCATTGCTTGAAGCAGAGAAGATTTTAAGAAGTGCACTAG
tactaac putative branch site (score: 0)
tttatttt CT-rich tract
tttatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtactaataatgaaattccaccaaggagtgaattgtgcaaaatgagaatactaacgtttattttgcattcagATTGCATCACTACAAGAAGATAAGAAAGCTTTGGAACGACTCACAAAGTCAAAAGAGGCAGCATTGCTTGAAGCAGAGAAGATTTTAAGAAGTGCACTAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT