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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatgtttgcctacatttacacgctcatttcacttcttgatcattttcactttgctactttatttgaaatgttattttttttttctgttgctaaactgtgtcattgcctttcaattgggacaatcagGAATTTTGCAAGAAATAATTTATCTGGAAATCTTCCTTATTCCATTTCTGCCATGGTTTCACTCAATTATTT

Basic information

species Glycine max
transcript GLYMA15G11820.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7925311|gb|AW831398.1|AW831398
EST:     AAGATCCATGATACAATTCCCTACCAGTTGCCACCGAATCTTACGAGCCT                         GAATTTTGCAAGAAATAATTTATCTGGAAATCTTCCTTATTCCATTTCTGC
genomic: AAGATCCATGATACAATTCCCTACCAGTTGCCACCGAATCTTACGAGCCTgtaatgtttg ... ggacaatcagGAATTTTGCAAGAAATAATTTATCTGGAAATCTTCCTTATTCCATTTCTGC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tattttttttttctgttgctaaactgtgtcattgcctttcaattgggacaatcagGAATTTTGCAAGAAATAATTTATCTGGAAATCTTCCTTATTCCATTTCTGCCATGGTTTCACTCAATTATTT
                tgctaaa  putative branch site (score: 2)
     tttttttct  TA-rich tract