1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tattaaaacactactcaattagtgatacatgaatacatgacacataatcatatatatagatagaacacaactgacaaatttccattgattgtgtgaacagGCTAAACAGTAAGGTGATAATTTTGAAGCTGTTAAGTAACACACGCGAACAATGACTCATGGCTGGAGCTCAAAGTGTCACTAATGAGGACTACGGCATT
species | Glycine max |
transcript | GLYMA15G11270.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ATGCTCTTGGTGCTGCCATTGCAATTCTAGGCACCTTCCTCTATTCACAG GCTAAACAGTAAGTTGATAATTTTGAAGCTGTTAAGTAACACACGCGAACAEST: gi|27424896|gb|CA936416.1|CA936416
genomic: ATGCTCTTGGTGCTGCCATTGCAATTCTTGGCACCTTCCTCTATTCACAGgtgcattgtc ... gtgtgaacagGCTAAACAGTAAGGTGATAATTTTGAAGCTGTTAAGTAACACACGCGAACA
EST: ATGCTCTTGGTGCTGCCATTGCAATTCTTGGCACCTTCCTCTATTCACAG GCTAAACAGTAAGTTGATAATTTTGAAGCTGTTAAGTAACACACGCGAACAEST: gi|15203044|gb|BI425812.1|BI425812
genomic: ATGCTCTTGGTGCTGCCATTGCAATTCTTGGCACCTTCCTCTATTCACAGgtgcattgtc ... gtgtgaacagGCTAAACAGTAAGGTGATAATTTTGAAGCTGTTAAGTAACACACGCGAACA
EST: ATGCTCTTGGTGCTGCCATTGCAATTCTTGGCACCTTCCTCTATTCACAG GCTAAACAGTAAGTTGATAATTTTGAAGCTGTTAAGTAACACACGCGAACAEST: gi|14195756|gb|BE657578.2|BE657578
genomic: ATGCTCTTGGTGCTGCCATTGCAATTCTTGGCACCTTCCTCTATTCACAGgtgcattgtc ... gtgtgaacagGCTAAACAGTAAGGTGATAATTTTGAAGCTGTTAAGTAACACACGCGAACA
EST: ATGCTCTTGGTGCTGCCATTGCAATTCTTGGCACCTTCCTCTATTCACAG GCTAAACAGTAAGGTGATAATTTTGAAGCTGTTAAGTAACACACGCGAACAEST: gi|298191086|gb|HO038565.1|HO038565
genomic: ATGCTCTTGGTGCTGCCATTGCAATTCTTGGCACCTTCCTCTATTCACAGgtgcattgtc ... gtgtgaacagGCTAAACAGTAAGGTGATAATTTTGAAGCTGTTAAGTAACACACGCGAACA
EST: ATGCTCTTGGTGCTGCCATTGCAATTCTTGGCACCTTCCTCTATTCACAG GCTAAACAGTAAGGTGATAATTTCGAAGCTGTTAAGTAACACACGCGAACAEST: gi|5057720|gb|AI736196.1|AI736196
genomic: ATGCTCTTGGTGCTGCCATTGCAATTCTTGGCACCTTCCTCTATTCACAGgtgcattgtc ... gtgtgaacagGCTAAACAGTAAGGTGATAATTTTGAAGCTGTTAAGTAACACACGCGAACA
EST: ATGCTCTTGGTGCTGCCATTGCAATTCTTGGCACCTTCCTCTATTCACAG GCTAAACAGTAAGGTGATAATTTTGAAGCTGTTAAGTAACACACGCGAACAEST: gi|120493159|gb|EH221326.1|EH221326
genomic: ATGCTCTTGGTGCTGCCATTGCAATTCTTGGCACCTTCCTCTATTCACAGgtgcattgtc ... gtgtgaacagGCTAAACAGTAAGGTGATAATTTTGAAGCTGTTAAGTAACACACGCGAACA
EST: ATGCTCTTGGTGCTGCCATTGCAATTCTTGGCACCTTCCTCTATTCACAG GCTAAACAGTAAGGTGATAATTTTGAAGCTGTTAAGTAACACACGCGAACAEST: gi|120496187|gb|EH224354.1|EH224354
genomic: ATGCTCTTGGTGCTGCCATTGCAATTCTTGGCACCTTCCTCTATTCACAGgtgcattgtc ... gtgtgaacagGCTAAACAGTAAGGTGATAATTTTGAAGCTGTTAAGTAACACACGCGAACA
EST: ATGCTCTTGGTGCTGCCATTGCAATTCTTGGCACCTTCCTCTATTCACAG GCTAAACAGTAAGGTGATAATTTTGAAGCTGTTAAGTAACACACGCGAACA
genomic: ATGCTCTTGGTGCTGCCATTGCAATTCTTGGCACCTTCCTCTATTCACAGgtgcattgtc ... gtgtgaacagGCTAAACAGTAAGGTGATAATTTTGAAGCTGTTAAGTAACACACGCGAACA
aatcatatatatagatagaacacaactgacaaatttccattgattgtgtgaacagGCTAAACAGTAAGGTGATAATTTTGAAGCTGTTAAGTAACACACGCGAACAATGACTCATGGCTGGAGCTCAAAGTGTCACTAATGAGGACTACGGCATT
tatatatagatagaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tattaaaacactactcaattagtgatacatgaatacatgacacataatcatatatatagatagaacacaactgacaaatttccattgattgtgtgaacagGCTAAACAGTAAGGTGATAATTTTGAAGCTGTTAAGTAACACACGCGAACAATGACTCATGGCTGGAGCTCAAAGTGTCACTAATGAGGACTACGGCATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - ctactca
- - - - - - - - - - - - - -catgaat
- - - - - - - - - - - - - - - - - acatgac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caactga