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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tattaaaacactactcaattagtgatacatgaatacatgacacataatcatatatatagatagaacacaactgacaaatttccattgattgtgtgaacagGCTAAACAGTAAGGTGATAATTTTGAAGCTGTTAAGTAACACACGCGAACAATGACTCATGGCTGGAGCTCAAAGTGTCACTAATGAGGACTACGGCATT

Basic information

species Glycine max
transcript GLYMA15G11270.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10709360|gb|BF009084.1|BF009084
EST:     ATGCTCTTGGTGCTGCCATTGCAATTCTAGGCACCTTCCTCTATTCACAG                         GCTAAACAGTAAGTTGATAATTTTGAAGCTGTTAAGTAACACACGCGAACA
genomic: ATGCTCTTGGTGCTGCCATTGCAATTCTTGGCACCTTCCTCTATTCACAGgtgcattgtc ... gtgtgaacagGCTAAACAGTAAGGTGATAATTTTGAAGCTGTTAAGTAACACACGCGAACA
EST: gi|27424896|gb|CA936416.1|CA936416
EST:     ATGCTCTTGGTGCTGCCATTGCAATTCTTGGCACCTTCCTCTATTCACAG                         GCTAAACAGTAAGTTGATAATTTTGAAGCTGTTAAGTAACACACGCGAACA
genomic: ATGCTCTTGGTGCTGCCATTGCAATTCTTGGCACCTTCCTCTATTCACAGgtgcattgtc ... gtgtgaacagGCTAAACAGTAAGGTGATAATTTTGAAGCTGTTAAGTAACACACGCGAACA
EST: gi|15203044|gb|BI425812.1|BI425812
EST:     ATGCTCTTGGTGCTGCCATTGCAATTCTTGGCACCTTCCTCTATTCACAG                         GCTAAACAGTAAGTTGATAATTTTGAAGCTGTTAAGTAACACACGCGAACA
genomic: ATGCTCTTGGTGCTGCCATTGCAATTCTTGGCACCTTCCTCTATTCACAGgtgcattgtc ... gtgtgaacagGCTAAACAGTAAGGTGATAATTTTGAAGCTGTTAAGTAACACACGCGAACA
EST: gi|14195756|gb|BE657578.2|BE657578
EST:     ATGCTCTTGGTGCTGCCATTGCAATTCTTGGCACCTTCCTCTATTCACAG                         GCTAAACAGTAAGGTGATAATTTTGAAGCTGTTAAGTAACACACGCGAACA
genomic: ATGCTCTTGGTGCTGCCATTGCAATTCTTGGCACCTTCCTCTATTCACAGgtgcattgtc ... gtgtgaacagGCTAAACAGTAAGGTGATAATTTTGAAGCTGTTAAGTAACACACGCGAACA
EST: gi|298191086|gb|HO038565.1|HO038565
EST:     ATGCTCTTGGTGCTGCCATTGCAATTCTTGGCACCTTCCTCTATTCACAG                         GCTAAACAGTAAGGTGATAATTTCGAAGCTGTTAAGTAACACACGCGAACA
genomic: ATGCTCTTGGTGCTGCCATTGCAATTCTTGGCACCTTCCTCTATTCACAGgtgcattgtc ... gtgtgaacagGCTAAACAGTAAGGTGATAATTTTGAAGCTGTTAAGTAACACACGCGAACA
EST: gi|5057720|gb|AI736196.1|AI736196
EST:     ATGCTCTTGGTGCTGCCATTGCAATTCTTGGCACCTTCCTCTATTCACAG                         GCTAAACAGTAAGGTGATAATTTTGAAGCTGTTAAGTAACACACGCGAACA
genomic: ATGCTCTTGGTGCTGCCATTGCAATTCTTGGCACCTTCCTCTATTCACAGgtgcattgtc ... gtgtgaacagGCTAAACAGTAAGGTGATAATTTTGAAGCTGTTAAGTAACACACGCGAACA
EST: gi|120493159|gb|EH221326.1|EH221326
EST:     ATGCTCTTGGTGCTGCCATTGCAATTCTTGGCACCTTCCTCTATTCACAG                         GCTAAACAGTAAGGTGATAATTTTGAAGCTGTTAAGTAACACACGCGAACA
genomic: ATGCTCTTGGTGCTGCCATTGCAATTCTTGGCACCTTCCTCTATTCACAGgtgcattgtc ... gtgtgaacagGCTAAACAGTAAGGTGATAATTTTGAAGCTGTTAAGTAACACACGCGAACA
EST: gi|120496187|gb|EH224354.1|EH224354
EST:     ATGCTCTTGGTGCTGCCATTGCAATTCTTGGCACCTTCCTCTATTCACAG                         GCTAAACAGTAAGGTGATAATTTTGAAGCTGTTAAGTAACACACGCGAACA
genomic: ATGCTCTTGGTGCTGCCATTGCAATTCTTGGCACCTTCCTCTATTCACAGgtgcattgtc ... gtgtgaacagGCTAAACAGTAAGGTGATAATTTTGAAGCTGTTAAGTAACACACGCGAACA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatcatatatatagatagaacacaactgacaaatttccattgattgtgtgaacagGCTAAACAGTAAGGTGATAATTTTGAAGCTGTTAAGTAACACACGCGAACAATGACTCATGGCTGGAGCTCAAAGTGTCACTAATGAGGACTACGGCATT
     tatatatagatagaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tattaaaacactactcaattagtgatacatgaatacatgacacataatcatatatatagatagaacacaactgacaaatttccattgattgtgtgaacagGCTAAACAGTAAGGTGATAATTTTGAAGCTGTTAAGTAACACACGCGAACAATGACTCATGGCTGGAGCTCAAAGTGTCACTAATGAGGACTACGGCATT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - ctactca
- - - - - - - - - - - - - -catgaat
- - - - - - - - - - - - - - - - - acatgac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caactga