Sequence
atgc intronic sequence ATGC exonic sequence...aatttggtgtttatcaatttcatatttatatattgcttgttgcaaagcagtatctggtgattacaaaggctaatgaagctgttgatttctgtggtttcagATAAAATTACATATCATTGCAATGCATGAATTATGTGAATACACTAAAGGAGAAGGATTTTCTGAGGGCTTTGATGCTCATCTCAATATTGAACAGATGA
Basic information
| species | Glycine max |
| transcript | GLYMA15G10760.2 |
| intron # | 4 |
| splice site | 3' |
| intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA15G10760.2 (Glycine max), 3'ss of exon 4
lower sequence: LOC_Os07g45160.1 (Oryza sativa), 3'ss of exon 11
--aatttggt--gtttatcaatttcatatttatatattgcttgttgcaaagcagtatctggtgattacaaaggctaatgaagctgttgatttctgtggtttcagATAAAATTACATATCATTGCAATGCATGAATTATGTGAATACACTAAAGGAGAAGGATTTTCTGAGGGCTTTGATGCTCATCTCAATATTGAACAGATGA
| || | ||| | | |||| | || | || || || | | | || | | | | | | |||| || | | ||||||| | || || || ||||||||||||||||| || |||| || |||||||| ||||| || || |||||||| ||||| || || || |||||||
gtagttacatttatttcttggtgtcat-tacatgt-ttatttatttcgacaccttaagttcccaaaaaatttcatcctcaagccaccttttcttttctgcccagATAAGGCTCCACATTATAGCAATGCATGAATTATGCGAGTACAACAAGGGAGAAGGGTTTTCAGAAGGTTTTGATGCACATCTTAACATCGAGCAGATGA
upper sequence: GLYMA15G10760.2 (Glycine max), 3'ss of exon 4
lower sequence: GRMZM2G429213_T01 (Zea mays), 3'ss of exon 5
aatttggtgtttatcaatttcat-atttatatattgcttgttgcaaagcagtatctggtgattacaaaggctaatgaagctgttgatttctgtggtttcagATAAAATTACATATCATTGCAATGCATGAATTATGTGAATACACTAAAGGAGAAGGATTTTCTGAGGGCTTTGATGCTCATCTCAATATTGAACAGATGA
| |||| | | | ||||||| | | || || | | | | || | | || | | || || ||| | ||||||| | || || ||||| |||||||||||||||||||||| ||||||||||| ||||| ||||| |||||||| || ||||| ||||| |||||||
attttgtcatgtgtttatttcatcagccactatgaatttattctgtgggcacccttatttcctggaatgtttcatcttgaagctgtcttttgttgag-cagATAAGGCTCCACATAATTGCGATGCATGAATTATGTGAATACAACAAAGGAGAAGGTTTTTCCGAGGGTTTTGATGCACACCTCAACATTGAGCAGATGA
upper sequence: GLYMA15G10760.2 (Glycine max), 3'ss of exon 4
lower sequence: GRMZM2G429231_T02 (Zea mays), 3'ss of exon 5
aatttggtgtttatcaatttcat-atttatatattgcttgttgcaaagcagtatctggtgattacaaaggctaatgaagctgttgatttctgtggtttcagATAAAATTACATATCATTGCAATGCATGAATTATGTGAATACACTAAAGGAGAAGGATTTTCTGAGGGCTTTGATGCTCATCTCAATATTGAACAGATGA
|||| | | | ||||||| | | || || | | | | || | | || | | || || ||| | ||||||| | || || ||||| |||||||||||||||||||||| ||||||||||| ||||| ||||| |||||||| || ||||| ||||| |||||||
gttttgtcatgtgtttatttcatcagccactatgaatttattctgtgggcacccttatttcctggaatgtttcatcttgaagctgtcttttgttgag-cagATAAGGCTCCACATAATTGCGATGCATGAATTATGTGAATACAACAAAGGAGAAGGTTTTTCCGAGGGTTTTGATGCACACCTCAACATTGAGCAGATGA
upper sequence: GLYMA15G10760.2 (Glycine max), 3'ss of exon 4
lower sequence: GRMZM2G429231_T01 (Zea mays), 3'ss of exon 14
aatttggtgtttatcaatttcat-atttatatattgcttgttgcaaagcagtatctggtgattacaaaggctaatgaagctgttgatttctgtggtttcagATAAAATTACATATCATTGCAATGCATGAATTATGTGAATACACTAAAGGAGAAGGATTTTCTGAGGGCTTTGATGCTCATCTCAATATTGAACAGATGA
|||| | | | ||||||| | | || || | | | | || | | || | | || || ||| | ||||||| | || || ||||| |||||||||||||||||||||| ||||||||||| ||| | ||||| |||||||| || ||||| ||||| |||||||
gttttgtcatgtgtttatttcatcagccactatgaatttattctgtgggcacccttatttcctggaatgtttcatcttgaagctgtcttttgttgag-cagATAAGGCTCCACATAATTGCGATGCATGAATTATGTGAATACAACAAAGGAGAAGGTTTTCCCGAGGGTTTTGATGCACACCTCAACATTGAGCAGATGA
upper sequence: GLYMA15G10760.2 (Glycine max), 3'ss of exon 4
lower sequence: AT3G06290.1 (Arabidopsis thaliana), 3'ss of exon 12
aatttggtgtttatcaatttcatatttatat-attg--cttgttgcaaagcagtatctggtgattacaaaggctaatgaagctgttgatttctgtggtttcagATAAAATTACATATCATTGCAATGCATGAATTATGTGAATACACTAAAGGAGAAGGATTTTCTGAGGGCTTTGATGCTCATCTCAATATTGAACAGATGA
|| |||||| || | |||| || | ||| | | || || || ||| | | | | | | || ||||||| || || ||||| | | | || ||||||||||||||||| |||||||||| ||||||||||| || ||||| ||||| |||||||| || || |||||||| |||||||
--gtttgtgttttctgatcttatataaatctcattaaacaggatgataaacaatattcttttttaaatgcgtgtgttcttactattgattttcctg-ttacagATTAGACTTCACATCATTGCAATGCATGAGCTATGTGAATATACTAAAGGAGAGGGCTTTTCGGAGGGGTTTGATGCACACCTGAATATTGAGCAGATGA
upper sequence: GLYMA15G10760.2 (Glycine max), 3'ss of exon 4
lower sequence: Vv05s0020g02350.t01 (Vitis vinifera), 3'ss of exon 7
aatttggtgtttatcaattt-catatttatatattgcttgttgcaaagcagtatctggtgattacaaaggctaatgaagctgt-tgatttctgtggtt-tcagATAAAATTACATATCATTGCAATGCATGAATTATGTGAATACACTAAAGGAGAAGGATTTTCTGAGGGCTTTGATGCTCATCTCAATATTGAACAGATGA
| || | || | | | || | |||| ||||| || || | || ||| |||| || | | |||||||||||| | ||||||| | | ||||| || || ||||||||||||||||||||||| |||||||| |||||||||||||| |||||||| || ||||||||||| |||||||
---ctactgctggaggatacgcgttagtctaagtgatgtgttccaaagtgtcatatgattcttctcaagactaagagagttttctgatttctgtgggtgccagATAAGACTTCATATAATAGCCATGCATGAATTATGTGAATACACAAAAGGAGAGGGATTTTCTGAGGGATTTGATGCACACCTCAATATTGAGCAGATGA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.agcagtatctggtgattacaaaggctaatgaagctgttgatttctgtggtttcagATAAAATTACATATCATTGCAATGCATGAATTATGTGAATACACTAAAGGAGAAGGATTTTCTGAGGGCTTTGATGCTCATCTCAATATTGAACAGATGA
tttctgt CT-rich tract
attacaaa TA-rich tract
Putative cis-regulatory sequences
| atgc | intron | ATGC | exonic elements by Pertea et al. |
| ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
aatttggtgtttatcaatttcatatttatatattgcttgttgcaaagcagtatctggtgattacaaaggctaatgaagctgttgatttctgtggtttcagATAAAATTACATATCATTGCAATGCATGAATTATGTGAATACACTAAAGGAGAAGGATTTTCTGAGGGCTTTGATGCTCATCTCAATATTGAACAGATGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
