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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattttaaagcattgttattgcagtttagtatttgaatagtggcaagatcttctgctatgtacatgtatgtaactgattaacaggcagccaattgcatttgtgcagATATTCCAATGGTTGGCAAATATGCCTGTAGAATTGGAAGGATATATCCGCCCTGGGTGTACGATCCTGACAGTTTTTATTGCAATGCCTAACATTATGT

Basic information

species Glycine max
transcript GLYMA15G10620.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G10620.1 (Glycine max), 3'ss of exon 4
lower sequence: AT5G18830.3 (Arabidopsis thaliana), 3'ss of exon 4
gtattttaaagcattgt-tattgcagtttagtatttgaatagtggcaagatcttctgctatgtacatgtatgtaactgattaacaggcagccaattgcatttgtgcagATATTCCAATGGTTGGCAAATATGCCTGTAGAATTGGAAGGATATATCCGCCCTGGGTGTACGATCCTGACAGTTTTTATTGCAATGCCTAACATTATGT
||||| | ||| ||| | |||| ||||||||| ||  || | |   | | |   || ||  | |  |  |   |||| || | |  ||    ||||  | || |||||||||| ||||||||||| || |||||||| ||  |||| || ||||||||||| || ||||| ||  |||| || ||||| ||||||||  | |||||||
gtattctcaagaattatatattacagtttagtgttcaaagact---atgtttaccttctcagaatct-caaagaactaat-atcttgcgattaatttgaatt-tgcagATATTTCAATGGTTGGCCAACATGCCTGTTGAGCTGGAGGGCTATATCCGCCCAGGATGTACAATTTTGACTGTCTTTATAGCAATGCCAGAGATTATGT

upper sequence: GLYMA15G10620.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv05s0020g02160.t01 (Vitis vinifera), 3'ss of exon 4
gtattttaaagcattgttattgcagtttagtatttgaatagtggcaagatcttctgctatgtacatgtat--gtaactgattaacaggcagccaattgcatttgtgcagATATTCCAATGGTTGGCAAATATGCCTGTAGAATTGGAAGGATATATCCGCCCTGGGTGTACGATCCTGACAGTTTTTATTGCAATGCCTAACATTATGT
||||||||||| ||| ||||| |||||||||||||  ||      ||    || |   |   | |  ||   | ||   |||||||  | ||  | ||  |||   ||||| ||||| |||||||| |  |||||| | || ||||| || |||||||| ||||||||||  ||| | ||| |||||||||||||||| ||  ||||||
gtattttaaaggattattattacagtttagtatttatatgagaataaatgtttttataagtcagagataccaggaatatattaacacactgctcaatgtgttt--acagATTTTCCAGTGGTTGGCTAGCATGCCTATTGAGTTGGAGGGCTATATCCGTCCTGGGTGTATCATCTTAACAATTTTTATTGCAATGCCAAAGTTTATGT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctgctatgtacatgtatgtaactgattaacaggcagccaattgcatttgtgcagATATTCCAATGGTTGGCAAATATGCCTGTAGAATTGGAAGGATATATCCGCCCTGGGTGTACGATCCTGACAGTTTTTATTGCAATGCCTAACATTATGT
                        gattaac  putative branch site (score: 2)
               tatgtaa  TA-rich tract