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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtctgtgtcacttttttgaatttacttacataaggctaagagtgttttgtgaatgttcagttttgttttctgacagtggaaagattttgatctgaatttgaatgtttataaatgataatgataacagGGTGAGAAGGAGTGTTCCTATTATGTGAAAACAGGACAATGCAAGTTTGGTGCAACTTGTAAATTCCATCATCCAGTTCCTGCTGGCGTCCAAATTCCAG

Basic information

species Glycine max
transcript GLYMA15G10230.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G10230.1 (Glycine max), 3'ss of exon 4
lower sequence: LOC_Os01g15460.2 (Oryza sativa), 3'ss of exon 4
gtctgtgtcacttttttgaatttacttacataaggctaagagtgttttgtgaatgttcagttttgttttctgacagtggaaagattttgatctgaatttga-atgtttataaatgataatgataacagGGTGAGAAGGAGTGTTCCTATTATGTGAAAACAGGACAATGCAAGTTTGGTGCAACTTGTAAATTCCATCATCCAGTTCCTGCTGGCGTCCAAATTCCAG
                                  |     | | | | || ||   |   || |    ||  ||| | |     |  || | ||||   || |||||  || |  ||||  |   ||||||||||||||||| ||||| ||  ||||||| || ||||| || |||||  | || ||||||||||||||||| |     | ||| || |  ||  |  
----------------------------------gtgtgaaatctctcgtaaaatattgcttat----tcatacacttgtttt-tcctgttttgaaaaagagatgttggtaca-aataa--aatgcagGGTGAGAAGGAGTGCTCCTACTACATGAAAACTGGGCAATGTAAATTTGGAACTACATGTAAATTCCATCATCCGGAATTCGGTGGTGTTCCGATGACCC

upper sequence: GLYMA15G10230.1 (Glycine max), 3'ss of exon 4
lower sequence: GRMZM2G069009_T01 (Zea mays), 3'ss of exon 4
gtctgtgtcacttttttgaatttacttacataaggctaagagtgttttgtgaatgttcagttttgttttctgacagtggaaagattttgatctgaatttgaatgtttataaatgataatgataacagGGTGAGAAGGAGTGTTCCTATTATGTGAAAACAGGACAATGCAAGTTTGGTGCAACTTGTAAATTCCATCATCCAGTTCCTGCTGGCGTCCAAATTCCAG
                                       | ||||| |        ||    ||  | | | |    |||     |||| |     | ||||   ||  |  |  |||||    |||||||| ||||| |||||||||||  ||||||| ||||| ||||||||||| || || |||||||||||||| ||||  | || |  | |        |  
-------------------------------------gtgggtgttctcattgcaatccacgtttctgtttaatctaggatcttgtttgtttattttatgaaaaattccatgtt-taatg----cagGGTGAAAAGGAATGTTCCTATTACATGAAAACTGGACATTGCAAGTTTGGAGCTACATGTAAATTCCATCACCCAGAACTTGGTTTCCTTACGGAGACGC

upper sequence: GLYMA15G10230.1 (Glycine max), 3'ss of exon 4
lower sequence: GRMZM2G036837_T02 (Zea mays), 3'ss of exon 4
gtctgtgtcacttttttgaatttacttacataaggctaagagtgttttgtgaatgttcagttttgttttctgacagtggaaagattttgatctgaatttgaatgtttataaatgataatgata-acagGGTGAGAAGGAGTGTTCCTATTATGTGAAAACAGGACAATGCAAGTTTGGTGCAACTTGTAAATTCCATCATCCAGTTCCTGCTGGCGTCCAAATTCCAG
                                               | |||   |||   | || ||  ||    | | |   |||   | | | |   ||   | ||  |   ||||||    ||||||||||| || || ||||| ||| |||| || || ||||||||||||||| | || |||||||| ||||||||||    || |||  | |   |  |  
----------------------------------------------gtatgagaattctcctatgattg-tgtttcttggattttttaagtattattggaaaaaataattgacattaatgaagtgcagGGTGAGAAAGAATGCTCCTACTATATGAAGACTGGGCAATGCAAGTTTGGTTCTACATGTAAATTTCATCATCCAGAATTTGGTGGTATTCCGGTGACCC

upper sequence: GLYMA15G10230.1 (Glycine max), 3'ss of exon 4
lower sequence: GRMZM2G086994_T01 (Zea mays), 3'ss of exon 4
gtctgtgtcacttttttgaatttacttacataaggctaagagtgttttgtgaatgttcagttttgttttctgacagtggaaagattttgatctgaatttgaatgtttataaatgataatgata-acagGGTGAGAAGGAGTGTTCCTATTATGTGAAAACAGGACAATGCAAGTTTGGTGCAACTTGTAAATTCCATCATCCAGTTCCTGCTGGCGTCCAAATTCCAG
                                               | |||   |||   | ||  |        | | || ||||| | |||  ||||       ||  |   |||||| |  ||||||||||| || || ||||| ||| |||| || || ||||||||||||||| | || |||||||| ||||||||||    || |||  | |   |  |  
----------------------------------------------gtatgagaattctcctatggatgtgcttctttgtaacatttttaactgtttttgggaaaaaatttacattaatgaaatgcagGGTGAGAAAGAATGCTCCTACTATATGAAGACTGGGCAATGCAAGTTTGGTTCTACATGTAAATTTCATCATCCAGAATTTGGTGGTATTCCGGTAACCC

upper sequence: GLYMA15G10230.1 (Glycine max), 3'ss of exon 4
lower sequence: GRMZM2G086994_T03 (Zea mays), 3'ss of exon 4
gtctgtgtcacttttttgaatttacttacataaggctaagagtgttttgtgaatgttcagttttgttttctgacagtggaaagattttgatctgaatttgaatgtttataaatgataatgata-acagGGTGAGAAGGAGTGTTCCTATTATGTGAAAACAGGACAATGCAAGTTTGGTGCAACTTGTAAATTCCATCATCCAGTTCCTGCTGGCGTCCAAATTCCAG
                                               | |||   |||   | ||  |        | | || ||||| | |||  ||||       ||  |   |||||| |  ||||||||||| || || ||||| ||| |||| || || ||||||||||||||| | || |||||||| ||||||||||    || |||  | |         
----------------------------------------------gtatgagaattctcctatggatgtgcttctttgtaacatttttaactgtttttgggaaaaaatttacattaatgaaatgcagGGTGAGAAAGAATGCTCCTACTATATGAAGACTGGGCAATGCAAGTTTGGTTCTACATGTAAATTTCATCATCCAGAATTTGGTGGTATTCCG-------

upper sequence: GLYMA15G10230.1 (Glycine max), 3'ss of exon 4
lower sequence: GRMZM2G069009_T02 (Zea mays), 3'ss of exon 4
gtctgtgtcacttttttgaatttacttacataaggctaagagtgttttgtgaatgttcagttttgttttctgacagtggaaagattttgatctgaatttgaatgtttataaatgataatgataacagGGTGAGAAGGAGTGTTCCTATTATGTGAAAACAGGACAATGCAAGTTTGGTGCAACTTGTAAATTCCATCATCCAGTTCCTGCTGGCGTCCAAATTCCAG
                                       | ||||| |        ||    ||  | | | |    |||     |||| |     | ||||   ||  |  |  |||||    |||||||| ||||| |||||||||||  ||||||| ||||| ||||||||||| || || |                                          
-------------------------------------gtgggtgttctcattgcaatccacgtttctgtttaatctaggatcttgtttgtttattttatgaaaaattccatgtt-taatg----cagGGTGAAAAGGAATGTTCCTATTACATGAAAACTGGACATTGCAAGTTTGGAGCTACAT------------------------------------------

upper sequence: GLYMA15G10230.1 (Glycine max), 3'ss of exon 4
lower sequence: GRMZM2G475017_T03 (Zea mays), 3'ss of exon 4
gtctgtgtcacttttttgaatttacttacataaggctaagagtgttttgtgaatgttca-gttttgt-tttctgacagtggaaagattttgatctgaatttgaatgtttataaatgataatgataacagGGTGAGAAGGAGTGTTCCTATTATGTGAAAACAGGACAATGCAAGTTTGGTGCAACTTGTAAATTCCATCATCCAGTTCCTG-CTGGCGTCCAAATTCCAG
                                                |||  |||||   |||  | ||||||        | ||| ||| |   | ||    | |  | |  |  |  | |    ||||||| ||||| ||||| |||||  ||||||| ||||| ||||| ||||| |  || |||||||||||||| ||||  | ||  |  | | || |  |   
------------------------------------------------gtgggtgttctcatttcatgtttctgtttaatctaggatcttgttt--atttattttatgaaaatttcgtggttaatgtagGGTGAAAAGGAATGTTCGTATTACATGAAAACTGGACATTGCAAATTTGGAGGTACATGTAAATTCCATCACCCAGAACTTGGTTTTCTTACAGAGACGC-

upper sequence: GLYMA15G10230.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv05s0020g01650.t01 (Vitis vinifera), 3'ss of exon 4
gtctgtgtcacttttttgaatttacttacataaggctaagagtgttttgtgaatgttcagttttgttttctgacagtggaaagattttgatctgaatttgaatgtttataaatgata-atgataacagGGTGAGAAGGAGTGTTCCTATTATGTGAAAACAGGACAATGCAAGTTTGGTGCAACTTGTAAATTCCATCATCCAGTTCCTGCTGGCGTCCAAATTCCAG
              | ||  |||  |   |      | |   | |  ||| ||||||   |||  |    | |||  |     | ||||   | || |||  |    |    |||||  |    ||||||||| || ||||| ||||| |||||||| |||||||  ||||||||||||| ||| ||||||||||||||||||   || | | || | ||| |  || 
-------------gtctgtgtttgttgcaactttttttaatctatcctgttaatgttagatttattggaatcacatagcctgaagtttgcagttaagttggct--caaagcttgatatgttgctacagGGTGAAAAAGAGTGCTCCTACTATGTGAAGACAGGACTTTGCAAGTTTGGTGAAACATGTAAATTCCATCATCCACAGCCAGATAGCATACAACTGTCAA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213620369|gb|DB957266.1|DB957266
EST:     CTGCTGCTACTCCCATGTCACTAAGTTATTATGGATATCCATTGCGACCG                         GGTGAGAAGGAGTGTTCCTATTATGTGAAAACAGG
genomic: CTGCTGCTACTCCCATGTCACTAAGTTATTATGGATATCCATTGCGACCGgtctgtgtca ... atgataacagGGTGAGAAGGAGTGTTCCTATTATGTGAAAACAGG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acagtggaaagattttgatctgaatttgaatgtttataaatgataatgataacagGGTGAGAAGGAGTGTTCCTATTATGTGAAAACAGGACAATGCAAGTTTGGTGCAACTTGTAAATTCCATCATCCAGTTCCTGCTGGCGTCCAAATTCCAG
                      aatttgaatgtttata  TA-rich tract