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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagttgcttataaaccttgtgcaatgattgttacattttgttgtatactttcttgataattaatatacttgacttttcacagGAAGGCTTTCAGAGATGAGCTTGCTCTGTTCCAGAAGATCCGGCATCCAAATGTCGTCCAATTTCTGGGTGCTGTGACCCAGAGTAGTCCAATGATGATT

Basic information

species Glycine max
transcript GLYMA15G09490.2
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G09490.2 (Glycine max), 3'ss of exon 4
lower sequence: GRMZM2G045366_T01 (Zea mays), 3'ss of exon 4
gtgagttgcttataaaccttgtgcaatgattgttacattttgttgtatactttcttgataattaatatacttgacttttcacagGAAGGCTTTCAGAGATGAGCTTGCTCTGTTCCAGAAGATCCGGCATCCAAATGTCGTCCAATTTCTGGGTGCTGTGACCCAGAGTAGTCCAATGATGATT
||| || | ||  |    || |    |   ||||    ||| || ||  |||   | ||   | |||   | ||    | ||||| |||| |||||||| ||||||| | || | ||    || || ||||||||||| || |||||| |||| |||||||| || || | |||||||||||||
gtgggtagtttccacttgtt-tctggtctatgttg-gctttattttacccttctattatc-ctgatagtttggatgccttacagGCAGGCATTCAGAGACGAGCTTGATGTGCTGCAACTTATACGTCATCCAAATGTTGTGCAATTTTTGGGCGCTGTGACACAAAGCAATCCAATGATGATT

upper sequence: GLYMA15G09490.2 (Glycine max), 3'ss of exon 4
lower sequence: Vv10s0003g02060.t01 (Vitis vinifera), 3'ss of exon 4
gtgagttgcttata--aaccttgtgcaatgattgttacattttgttgtatactttcttgataatt---------------aatatacttgacttttcacagGAAGGCTTTCAGAGATGAGCTTGCTCTGTTCCAGAAGATCCGGCATCCAAATGTCGTCCAATTTCTGGGTGCTGTGACCCAGAGTAGTCCAATGATGATT
||| |||    |||  | |  || |   ||||| |||  | | |   |||   | || |   |||               ||     |||  ||| ||||||||||| || ||||||||||||||  || | |||||||| || ||||| ||||| ||||| |||||||||||||| || || ||||||||||||||||||
gtgggttttcaatactagcaatgagttttgatttttatttgtggccttatttctgctggtagattgcttttatccatctgaaagctgttggttttgcacagGAAGGCATTTAGAGATGAGCTTGCATTGCTTCAGAAGATACGACATCCCAATGTAGTCCAGTTTCTGGGTGCTGTAACTCAAAGTAGTCCAATGATGATT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10709845|gb|BF009569.1|BF009569
EST:     GGATGTAATTAGTGATGAGGAGAAAGT                         GAAGGCTTTCAGATATGAGCTTGCTCTGTTCCAGAAGATCCGGCATCCAAA
genomic: GGATGTAATTAGTGATGAGGAGAAAGTgtgagttgct ... cttttcacagGAAGGCTTTCAGAGATGAGCTTGCTCTGTTCCAGAAGATCCGGCATCCAAA
EST: gi|11688954|gb|BF596692.1|BF596692
EST:     GTTGCAGTAAAAAAGCTTGGGGAGGATGTAATTAGTGATGAGGAGAAAGT                         GAAGGCTCTCAGAGATGAGCTTGCTCTGTTCCAGAAGATCCGGCATCCAAA
genomic: GTTGCAGTAAAAAAGCTTGGGGAGGATGTAATTAGTGATGAGGAGAAAGTgtgagttgct ... cttttcacagGAAGGCTTTCAGAGATGAGCTTGCTCTGTTCCAGAAGATCCGGCATCCAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgttacattttgttgtatactttcttgataattaatatacttgacttttcacagGAAGGCTTTCAGAGATGAGCTTGCTCTGTTCCAGAAGATCCGGCATCCAAATGTCGTCCAATTTCTGGGTGCTGTGACCCAGAGTAGTCCAATGATGATT
                                             cttttcac  CT-rich tract
             ttgtatactttcttga  TA-rich tract