Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
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 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tttgaggtactgtttttttttataactggactcaggaaacttttagccaacctttgttattttttcaatgttaaatttcatttgttgcttacccatgcagGAACTCCTTGTTTCCGTGGTTATGGAAGGCGCAATGGAGAGCGTAGGAGGAAGTCTGTTCGTGGGTGCATTGTCAGCCCTGACCTCTCTGTTCTCAACTT

Basic information

species Glycine max
transcript GLYMA15G08210.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G08210.1 (Glycine max), 3'ss of exon 4
lower sequence: LOC_Os07g42950.1 (Oryza sativa), 3'ss of exon 4
tttgaggtactgtttttttttataactggactcaggaaacttttagccaacctttgttattttttcaatgttaaatttcatttgttgcttacccatgcagGAACTCCTTGTTTCCGTGGTTATGGAAGGCGCAATGGAGAGCGTAGGAGGAAGTCTGTTCGTGGGTGCATTGTCAGCCCTGACCTCTCTGTTCTCAACTT
    |   |   | | ||| ||| | ||   |  ||| | |  |  ||        ||  | |  | || |||         |||| |||      ||||| || ||||| |||||||| ||||| |||||  |||| ||||| |||||||||||||| ||||| ||||| |||||||  ||||| |||||| | |||||
--gtaaaaaggctctatttctattattgactttcggatattcatgccc--------ttgctctgaccatatta---------tgttacttgtatg-gcagGCACACCTTGCTTCCGTGGGTATGGCAGGCGTGATGGTGAGCGCAGGAGGAAGTCTGTCCGTGGTTGCATCGTCAGCCAGGACCTATCTGTTATTAACTT

upper sequence: GLYMA15G08210.1 (Glycine max), 3'ss of exon 4
lower sequence: LOC_Os03g27260.1 (Oryza sativa), 3'ss of exon 4
tttgaggtactgtttttttttataactggac--tcaggaaacttttagccaacctttgttattttttcaatgttaa-atttcatttgttgcttacccatgcagGAACTCCTTGTTTCCGTGGTTATGGAAGGCGCAATGGAGAGCGTAGGAGGAAGTCTGTTCGTGGGTGCATTGTCAGCCCTGACCTCTCTGTTCTCAACTT
    || |  |     |  ||| |  || |   | | |   | ||| ||    ||  |    | ||  ||||| ||  || |||||     |||  |   |||| || || || |||||||| ||||| |||||  |||| ||||| || |||||||| || ||||| |||||||||||||  || ||||||||| |||||||
--gtagatgtttaagatgcttacatttgaatggttatgtttcattttgctttgctg-gcaggtgttctaatgtgaatgttccattt-----ttatactgacagGTACCCCCTGCTTCCGTGGATATGGCAGGCGTGATGGTGAGCGCAGAAGGAAGTCAGTCCGTGGTTGCATTGTCAGCCAAGATCTCTCTGTTATCAACTT

upper sequence: GLYMA15G08210.1 (Glycine max), 3'ss of exon 4
lower sequence: GRMZM2G054136_T06 (Zea mays), 3'ss of exon 3
---------tttgaggtactgtttttttttataactggactcaggaaacttttagc--caacctttgttattttttcaatgttaaatttcatttgttgcttacccatgcagGAACTCCTTGTTTCCGTGGTTATGGAAGGCGCAATGGAGAGCGTAGGAGGAAGTCTGTTCGTGGGTGCATTGTCAGCCCTGACCTCTCTGTTCTCAACTT
          | | ||||  |    ||  |||  |      |||   ||| | | |  || | |||  | |  ||   || | ||    |||| | |    |  | || ||| ||||| || |||||||||||||| ||||| ||||| ||||| |||||||||||||| ||||| ||||| || ||||  ||||| |||||| |||||||
ttctgctccataggggtatagagacttcctatgtc------cagtgtactctcaacaccatcttttactctgattcttatctgaa----cattcgatatcaattc-tgtagGCACTCCCTGCTTCCGTGGTTATGGCAGGCGTAATGGTGAGCGCAGGAGGAAGTCTGTCCGTGGTTGCATCGTGAGCCAAGACCTATCTGTTATCAACTT

upper sequence: GLYMA15G08210.1 (Glycine max), 3'ss of exon 4
lower sequence: GRMZM2G054136_T01 (Zea mays), 3'ss of exon 4
tttgaggtactgtttttttttataactggactcaggaaacttttagc--caacctttgttattttttcaatgttaaatttcatttgttgcttacccatgcagGAACTCCTTGTTTCCGTGGTTATGGAAGGCGCAATGGAGAGCGTAGGAGGAAGTCTGTTCGTGGGTGCATTGTCAGCCCTGACCTCTCTGTTCTCAACTT
      |||  |    ||  |||  |      |||   ||| | | |  || | |||  | |  ||   || | ||    |||| | |    |  | || ||| ||||| || |||||||||||||| ||||| ||||| ||||| |||||||||||||| ||||| ||||| || ||||  ||||| |||||| |||||||
------gtatagagacttcctatgtc------cagtgtactctcaacaccatcttttactctgattcttatctgaa----cattcgatatcaattc-tgtagGCACTCCCTGCTTCCGTGGTTATGGCAGGCGTAATGGTGAGCGCAGGAGGAAGTCTGTCCGTGGTTGCATCGTGAGCCAAGACCTATCTGTTATCAACTT

upper sequence: GLYMA15G08210.1 (Glycine max), 3'ss of exon 4
lower sequence: GRMZM2G054136_T02 (Zea mays), 3'ss of exon 3
tttgaggtactgtttttttttataactggactcaggaaacttttagc--caacctttgttattttttcaatgttaaatttcatttgttgcttacccatgcagGAACTCCTTGTTTCCGTGGTTATGGAAGGCGCAATGGAGAGCGTAGGAGGAAGTCTGTTCGTGGGTGCATTGTCAGCCCTGACCTCTCTGTTCTCAACTT
      |||  |    ||  |||         |||   ||| | |||  || | |||  | |  ||   || | ||    |||| | |    |  | || ||| ||||| || |||||||||||||| ||||| ||||| ||||| |||||||||||||| ||||| ||||| || ||||  ||||| |||||| |||||||
------gtatagagacttcctatt------tacagtgtactctcagcaccatcttttactctgattcttatctgaa----cattcgatatcaattc-tgtagGGACTCCCTGCTTCCGTGGTTATGGCAGGCGTAATGGTGAGCGCAGGAGGAAGTCTGTCCGTGGTTGCATCGTGAGCCAAGACCTATCTGTTATCAACTT

upper sequence: GLYMA15G08210.1 (Glycine max), 3'ss of exon 4
lower sequence: GRMZM5G851698_T01 (Zea mays), 3'ss of exon 4
tttgaggtactgtttttttttataactggactcaggaaacttttagccaacctttgttattttttcaatgttaaatttcatttgttgcttacccatgcagGAACTCCTTGTTTCCGTGGTTATGGAAGGCGCAATGGAGAGCGTAGGAGGAAGTCTGTTCGTGGGTGCATTGTCAGCCCTGACCTCTCTGTTCTCAACTT-----------------------------------------------------------------------
                                                                    | |   |   |||||| |  | |    || ||| ||||| || ||||| |||||||| ||||| ||||| ||||| |||||||||||||| ||||| || ||||| ||||  ||||| |||||| |||||||                                                                       
--------------------------------------------------------------------tatctgaa--catttgata-tgaattgtgtaggcactccctgcttccgcggttatggcaggcgtaatggtgagcgcaggaggaagtctgtccgtggttgtattGTGAGCCAAGACCTATCTGTTATCAACTTGGTAATTGTTAAGAAGGGTGAGAACGATCTGCCTGGTTTAACTGACACTGAGAAGCCAAGGATGAGGGGTC

upper sequence: GLYMA15G08210.1 (Glycine max), 3'ss of exon 4
lower sequence: GRMZM5G851698_T02 (Zea mays), 3'ss of exon 4
tttgaggtactgtttttttttataactggactcaggaaacttttagccaacctttgttattttttcaatgttaaatttcatttgttgcttacccatgcagGAACTCCTTGTTTCCGTGGTTATGGAAGGCGCAATGGAGAGCGTAGGAGGAAGTCTGTTCGTGGGTGCATTGTCAGCCCTGACCTCTCTGTTCTCAACTT
 |  |   ||||| | |   |   |||   ||||  |  |  |     | |  | ||| || | | ||  ||  || | | ||||           | ||| ||||| || ||||| |||||||| ||||| ||||| ||||| |||||||||||||| ||||| || ||||| ||||  ||||| |||||| |||||||
gtatatagactgtatctccattgtact---ctcaacaccccctcttttacctgtggttcttatctgaacatttgatatgaattgt-----------gtagGCACTCCCTGCTTCCGCGGTTATGGCAGGCGTAATGGTGAGCGCAGGAGGAAGTCTGTCCGTGGTTGTATTGTGAGCCAAGACCTATCTGTTATCAACTT

upper sequence: GLYMA15G08210.1 (Glycine max), 3'ss of exon 4
lower sequence: GRMZM2G040600_T01 (Zea mays), 3'ss of exon 3
---------tttgaggtactgtttttttttataactggactcaggaaacttttagc--caacctttgttattttttcaatgttaaatttcatttgttgcttacccatgcagGAACTCCTTGTTTCCGTGGTTATGGAAGGCGCAATGGAGAGCGTAGGAGGAAGTCTGTTCGTGGGTGCATTGTCAGCCCTGACCTCTCTGTTCTCAACTT
          | | ||||  |    ||  |||  |      |||   ||| | |||  || | |||  | |  ||   || | ||    |||| | |    |  | || ||| ||||| || |||||||||||||| ||||| ||||  ||||| |||||||| ||||| ||||| ||||| || ||||  ||||| |||||| |||||||
ctctactccataggggtatagagacttcctatgtc------cagtgtactctcagcaccatcttttactctgattcttatctgaa----cattcgatatcaattc-tgtagGCACTCCCTGCTTCCGTGGTTATGGCAGGCGTAATGTTGAGCGCAGGAGGAATTCTGTCCGTGGTTGCATCGTGAGCCAAGACCTATCTGTTATCAACTT

upper sequence: GLYMA15G08210.1 (Glycine max), 3'ss of exon 4
lower sequence: AT5G10360.2 (Arabidopsis thaliana), 3'ss of exon 4
tttgaggtactg--tttttttttataactggactcaggaaacttttagccaacctttgttattttttcaatgttaaatttcatttg--ttgcttacc-catgcagGAACTCCTTGTTTCCGTGGTTATGGAAGGCGCAATGGAGAGCGTAGGAGGAAGTCTGTTCGTGGGTGCATTGTCAGCCCTGACCTCTCTGTTCTCAACTT
      |||||   ||       ||   |  | | |   | ||| |  |     ||  ||| | ||      ||    || || ||   || |||     |  ||| |||||||||||  | ||  | |||||| | | ||||||| | ||  | |||||||| ||||| |||||||| ||||||||||| |||||||| |||||
------gtactagattccaccccattgataaaattatacagcttct--ctttttttcattaatcttctgtgttttttatttatgtgatctggttattgtgtttagGTACTCCTTGTTTTAGAGGACACGGAAGGAGGACTGGAGAGAGGAGACGAAAGTCTGTCCGTGGTTGCATTGTGAGCCCTGACCTGTCTGTTCTTAACTT

upper sequence: GLYMA15G08210.1 (Glycine max), 3'ss of exon 4
lower sequence: AT4G31700.1 (Arabidopsis thaliana), 3'ss of exon 4
----tttgaggtactgtttttttttataact--ggactcaggaaactttta-gccaacctttgttattttttcaatgttaaatttcatttgttgcttacccatg--cagGAACTCCTTGTTTCCGTGGTTATGGAAGGCGCAATGGAGAGCGTAGGAGGAAGTCTGTTCGTGGGTGCATTGTCAGCCCTGACCTCTCTGTTCTCAACTT
     |  |  || |   |||| ||| |  |  | |   |  |    |||         | |||   | |||   |||  | |  ||||  ||  | |    ||  ||||||||||||| ||| | ||  |||||||| | | ||| ||| | || || |||||||||||||| |||||||| |||||||| ||||||||||| ||| |
gtaactaaacataataccttttcttacacttttgcatctataatggatttgtatttgtgtgtgtgtgtgttttgctgtagattaacattgtttcgtaatgggtgaacagGAACTCCTTGCTTCAGAGGACATGGAAGGAGAACTGGTGAGAGGAGAAGAAAGTCTGTTCGTGGTTGCATTGTGAGCCCTGATCTCTCTGTTCTGAACCT

upper sequence: GLYMA15G08210.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv07s0191g00060.t01 (Vitis vinifera), 3'ss of exon 4
---------------------------------------------------------------------------------tttgaggtactgtttttttttataactggactcaggaaacttttagccaacctttgttattttttcaatg---ttaaatttcatttgttgcttacccatgcagGAACTCCTTGTTTCCGTGGTTATGGAAGGCGCAATGGAGAGCGTAGGAGGAAGTCTGTTCGTGGGTGCATTGTCAGCCCTGACCTCTCTGTTCTCAACTT
                                                                                  ||  || | | | |  | |||  | ||   | |      | | |  |  | |||| |   |  |  |||    |||     ||| |    || |     |||| || ||||| |||||||| |||||||| || ||||||||||| ||||||||| |||||||||| |||||||| ||||  |||||||| ||| | |||||
gttggtagactggtctactactttgtgcatatttagatgtgaaacaattaaatgcagtttttatatattgttttggagtttatttgggcattttctcctgttagcattgtggttaatttg-tctcattctgcatttgctcgatgcttgatgaaactaatacgaattggcattttgcttgaacagGCACCCCTTGCTTCCGTGGATATGGAAGACGTAATGGAGAGCGAAGGAGGAAGGCTGTTCGTGGATGCATTGTTAGCCAGGACCTCTCAGTTTTGAACTT

upper sequence: GLYMA15G08210.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv03s0017g01350.t01 (Vitis vinifera), 3'ss of exon 4
---------tttgaggtactgtttttttttataactggactcagg----aaacttttagcca-acctttgttattttttcaatgttaaatttcatttgttgcttacccatgcagGAACTCCTTGTTTCCGTGGTTATGGAAGGCGCAATGGAGAGCGTAGGAGGAAGTCTGTTCGTGGGTGCATTGTCAGCCCTGACCTCTCTGTTCTCAACTT
          | |   |  | |  |  || | |||||  | ||      ||  |  ||     |     |||   | |   |  || | || || ||  ||||||     ||||| || || || |||||||| |||||||| || ||||||||||| ||||||||| ||||||||||||||||||||||||  |||||||||||| | |||||
gtgagtaaactgggactgttctaatccttaaaaactgatcacaacccttaagttcatatttttatgcaagttgggtctatgagattta-ttacactttatgcttatttgagcagGTACCCCATGCTTCCGTGGATATGGAAGACGTAATGGAGAGCGAAGGAGGAAGGCTGTTCGTGGGTGCATTGTCAGCCAAGACCTCTCTGTTTTGAACTT

upper sequence: GLYMA15G08210.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv18s0001g06290.t01 (Vitis vinifera), 3'ss of exon 4
----------------------------------------------tttgaggtactgtttttttttataactggactcaggaaactttta-----gccaacctttgttattttttca---atgttaaatttcatttgttgc----ttacccatgcagGAACTCCTTGTTTCCGTGGTTATGGAAGGCGCAATGGAGAGCGTAGGAGGAAGTCTGTTCGTGGGTGCATTGTCAGCCCTGACCTCTCTGTTCTCAACTT
                                               || | ||  |    |   | |   |  |    | | |  ||||       |||   ||||||   || |||   ||| |  ||   |  ||||      || |  | |||||||| ||||| || || || ||||| ||||| ||||||||| | ||||||||| |||| |||||||||||||||||||  ||||| |||||||| |||||
gtgggtttttggtggtatattagtgttggtgcactgaccaccattccttcaagt-ttaagatggatcacggccagttagaagcatgttttgctaggaccatgttttgttgccttgtcatagatgatggatgaaaactgttctagttttgcttaagcagGAACCCCTTGCTTTCGAGGATATGGTAGGCGTAATGGAGAGAGGAGGAGGAAGGCTGTACGTGGGTGCATTGTCAGCCAGGACCTTTCTGTTCTGAACTT

upper sequence: GLYMA15G08210.1 (Glycine max), 3'ss of exon 4
lower sequence: EFJ14726 (Selaginella moellendorffii), 3'ss of exon 3
tttgaggtactgtttttttttataactggactcaggaaacttttagccaacctttgttattttttcaatgttaaatttcatttgttgcttacccatgcagGAACTCCTTGTTTCCGTGGTTATGGAAGGCGCAATGGAGAGCGTAGGAGGAAGTCTGTTCGTGGGTGCATTGTCAGCCCTGACCTCTCTGTTCTCAACTT
                                    ||||  |  ||    |||| || |||| ||  | ||   ||    ||   | || |     ||||     |||| || ||||| |||||  | ||| |||| ||||| ||||||||||| |||||||| ||||||||||||| ||| || |||||||||||  |
---------------------------------gtaaaacgat--gct--tcttttttcttttctccctctttcgttctgatttgagatt-cgtgaccagGCGACACTTGCTTTCGTGGGTATGGGCGACGCGATGGTGAGCGGAGGAGGAAGTCAGTTCGTGGTTGCATTGTCAGCCATGATCTGTCTGTTCTCAATCT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192326140|gb|FK016257.1|FK016257
EST:     GAAGCAAGGAGTGTTGACCCCTGGTCGTGTTCGCCTCTTGCTGCATAGAG                         GAACTCCTTGTTTCCGTGGTTATGGAAGGCGCAATGGAGAGCGTAGGAGGA
genomic: GAAGCAAGGAGTGTTGACCCCTGGTCGTGTTCGCCTCTTGCTGCATAGAGgtttgtctat ... acccatgcagGAACTCCTTGTTTCCGTGGTTATGGAAGGCGCAATGGAGAGCGTAGGAGGA
EST: gi|13251887|gb|BG362790.1|BG362790
EST:     GAAGCAAGGAGTGTTGACCCCTGGTCGTGTTCGCCTCTTGCTGCATAGAG                         GAACTCCTTGTTTCCGTGGTTATGGAAGGCGCAATGGAGAGCGTATGAGGA
genomic: GAAGCAAGGAGTGTTGACCCCTGGTCGTGTTCGCCTCTTGCTGCATAGAGgtttgtctat ... acccatgcagGAACTCCTTGTTTCCGTGGTTATGGAAGGCGCAATGGAGAGCGTAGGAGGA
EST: gi|10709860|gb|BF009584.1|BF009584
EST:     GAAGCAAGGAGTGTTGACCCCTGGTCGTGTTCGCCTCTTGCTGCATAGAG                         GAACTCCTTGTTTCCGTGGTTATGGAAGGCGCAATGGAGAGCGTAGGAGGA
genomic: GAAGCAAGGAGTGTTGACCCCTGGTCGTGTTCGCCTCTTGCTGCATAGAGgtttgtctat ... acccatgcagGAACTCCTTGTTTCCGTGGTTATGGAAGGCGCAATGGAGAGCGTAGGAGGA
EST: gi|298172139|gb|HO021731.1|HO021731
EST:     GAAGCAAGGAGTGTTGACCCCTGGTCGTGTTCGCCTCTTGCTGCATAGAG                         GAACTCCTTGTTTCCGTGGTTATGGAAGGCGCAATGGAGAGCGTAGGAGGA
genomic: GAAGCAAGGAGTGTTGACCCCTGGTCGTGTTCGCCTCTTGCTGCATAGAGgtttgtctat ... acccatgcagGAACTCCTTGTTTCCGTGGTTATGGAAGGCGCAATGGAGAGCGTAGGAGGA
EST: gi|7684647|gb|AW755295.1|AW755295
EST:     AGGAGTGTTGACCCCTGGTCGTGTTCGCCTCTTGCTGCATAGAG                         GAACTCCTTGTTTCCGTGGTTATGGAAGGCGCAATGGAGAGCGTAGGAGGA
genomic: AGGAGTGTTGACCCCTGGTCGTGTTCGCCTCTTGCTGCATAGAGgtttgtctat ... acccatgcagGAACTCCTTGTTTCCGTGGTTATGGAAGGCGCAATGGAGAGCGTAGGAGGA
EST: gi|208292822|gb|GE095610.1|GE095610
EST:     AAGCAAGGAGTGTTGACCCCTGGTCGTGTTCGCCTCTTGCTGCATAGAG                         GAACTCCTTGTTTCCGTGGTTATGGAAGGCGCAATGGAGAGCGTAGGAGGA
genomic: AAGCAAGGAGTGTTGACCCCTGGTCGTGTTCGCCTCTTGCTGCATAGAGgtttgtctat ... acccatgcagGAACTCCTTGTTTCCGTGGTTATGGAAGGCGCAATGGAGAGCGTAGGAGGA
EST: gi|193317089|gb|FK279879.1|FK279879
EST:     GAAGCAAGGAGTGTTGACCCCTGGTCGTGTTCGCCTCTTGCTGCATAGAG                         GAACTCCTTGTTTCCGTGGTTACGGAAGGCGCAATGGAGAGCGTAGGAGGA
genomic: GAAGCAAGGAGTGTTGACCCCTGGTCGTGTTCGCCTCTTGCTGCATAGAGgtttgtctat ... acccatgcagGAACTCCTTGTTTCCGTGGTTATGGAAGGCGCAATGGAGAGCGTAGGAGGA
EST: gi|192303339|gb|FG995633.1|FG995633
EST:     GAAGCAAGGAGTGTTGACCCCTGGTCGTGTTCGCCTCTTGCTGCATAGAG                         GAACTCCTTGTTTCCGTGGTTATGGAAGGCGCAATGGAGAGCGTAGGAGGA
genomic: GAAGCAAGGAGTGTTGACCCCTGGTCGTGTTCGCCTCTTGCTGCATAGAGgtttgtctat ... acccatgcagGAACTCCTTGTTTCCGTGGTTATGGAAGGCGCAATGGAGAGCGTAGGAGGA
EST: gi|8826310|gb|BE210040.1|BE210040
EST:     GAAGCAAGGAGTGTTGACCCCTGGTCGTGTTCGCCTCTTGCTGCATAGAG                         GAACTCCTTGTTTCCGTGGTTATGGAAGGCGCAATGGAGAGCGTAGGAGGA
genomic: GAAGCAAGGAGTGTTGACCCCTGGTCGTGTTCGCCTCTTGCTGCATAGAGgtttgtctat ... acccatgcagGAACTCCTTGTTTCCGTGGTTATGGAAGGCGCAATGGAGAGCGTAGGAGGA
EST: gi|6071105|gb|AW100492.1|AW100492
EST:     GTTGACCCCTGGTCGTGTTCGCCTCTTGCTGCATAGAG                         GAACTCCTTGTTTCCGTGGTTATGGAAGGCGCAATGGAGAGCGTAGGAGGA
genomic: GTTGACCCCTGGTCGTGTTCGCCTCTTGCTGCATAGAGgtttgtctat ... acccatgcagGAACTCCTTGTTTCCGTGGTTATGGAAGGCGCAATGGAGAGCGTAGGAGGA
EST: gi|22525238|gb|BU084049.1|BU084049
EST:     GAAGCAAGGAGTGTTGACCCCTGGTCGTGTTCGCCTCTTGCTGCATAGAG                         GAACTCCTTGTTTCCGTGGTTATGGAAGGCGCAATGGAGAGCGTAGGAGGA
genomic: GAAGCAAGGAGTGTTGACCCCTGGTCGTGTTCGCCTCTTGCTGCATAGAGgtttgtctat ... acccatgcagGAACTCCTTGTTTCCGTGGTTATGGAAGGCGCAATGGAGAGCGTAGGAGGA
EST: gi|213601201|gb|DB964680.1|DB964680
EST:     GAAGCAAGGAGTGTTGACCCCTGGTCGTGTTCGCCTCTTGCTGCATAGAG                         GAACTCCTTGTTTCCGTGGTTATGGAAGGCGCAATGGAGAGCGTAGGAGGA
genomic: GAAGCAAGGAGTGTTGACCCCTGGTCGTGTTCGCCTCTTGCTGCATAGAGgtttgtctat ... acccatgcagGAACTCCTTGTTTCCGTGGTTATGGAAGGCGCAATGGAGAGCGTAGGAGGA
EST: gi|18730661|gb|BM526007.1|BM526007
EST:     GAAGCAAGGAGTGTTGACCCCTGGTCGTGTTCGCCTCTTGCTGCATAGAG                         GAACTCCTTGTTTCCGTGGTTATGGAAGGCGCAATGGAGAGCGTAGGAGGA
genomic: GAAGCAAGGAGTGTTGACCCCTGGTCGTGTTCGCCTCTTGCTGCATAGAGgtttgtctat ... acccatgcagGAACTCCTTGTTTCCGTGGTTATGGAAGGCGCAATGGAGAGCGTAGGAGGA
EST: gi|13181588|gb|BG352928.1|BG352928
EST:     GAAGCAAGGAGTGTTGACCCCTGGTCGTGTTCGCCTCTTGCTGCATAGAG                         GAACTCCTTGTTTCCGTGGTTATGGAAGGCGCAATGGAGAGCGTAGGAGGA
genomic: GAAGCAAGGAGTGTTGACCCCTGGTCGTGTTCGCCTCTTGCTGCATAGAGgtttgtctat ... acccatgcagGAACTCCTTGTTTCCGTGGTTATGGAAGGCGCAATGGAGAGCGTAGGAGGA
EST: gi|298193972|gb|HO040620.1|HO040620
EST:     GAAGCAAGGAGTGTTGACCCCTGGTCGTGTTCGCCTCTTGCTGCATAGAG                         GAACTCCTTGTTTCCGTGGTTATGGAAGGCGCAATGGAGAGCGTAGGAGGA
genomic: GAAGCAAGGAGTGTTGACCCCTGGTCGTGTTCGCCTCTTGCTGCATAGAGgtttgtctat ... acccatgcagGAACTCCTTGTTTCCGTGGTTATGGAAGGCGCAATGGAGAGCGTAGGAGGA
EST: gi|192332916|gb|FK025013.1|FK025013
EST:     GAAGCAAGGAGTGTTGACCCCTGGTCGTGTTCGCCTCTTGCTGCATAGAG                         GAACTCCTTGTTTCCGTGGTTATGGAAGGCGCAATAGAGAGCGTAGGAGGA
genomic: GAAGCAAGGAGTGTTGACCCCTGGTCGTGTTCGCCTCTTGCTGCATAGAGgtttgtctat ... acccatgcagGAACTCCTTGTTTCCGTGGTTATGGAAGGCGCAATGGAGAGCGTAGGAGGA
EST: gi|20811812|gb|BQ296290.1|BQ296290
EST:     GAAGCAAGGAGTGTTGACCCCTGGTCGTGTTCGCCTCTTGCTGCATAGAG                         GAACTCCTTGTTTCCGTGGTTATGGAAGGCGCAATGGAGAGCGTAGGAGGA
genomic: GAAGCAAGGAGTGTTGACCCCTGGTCGTGTTCGCCTCTTGCTGCATAGAGgtttgtctat ... acccatgcagGAACTCCTTGTTTCCGTGGTTATGGAAGGCGCAATGGAGAGCGTAGGAGGA
EST: gi|4313890|gb|AI461009.1|AI461009
EST:     GAAGCAAGGAGTGTTGACCCCTGGTCGTGTTCGCCTCTTGCTGCATAGAG                         GAACTCCTTGTTTCCGTGGTTATGGAAGGCGCAATGGAGAGCGTAGGAGGA
genomic: GAAGCAAGGAGTGTTGACCCCTGGTCGTGTTCGCCTCTTGCTGCATAGAGgtttgtctat ... acccatgcagGAACTCCTTGTTTCCGTGGTTATGGAAGGCGCAATGGAGAGCGTAGGAGGA
EST: gi|5058304|gb|AI736780.1|AI736780
EST:     GAAGCAAGGAGTGTTGACCCCTGGTCGTGTTCGCCTCTTGCTGCATAGAG                         GAACTCCTTGTTTCCGTGGTTATGGAAGGCGCAATGGAGAGCGTAGGAGGA
genomic: GAAGCAAGGAGTGTTGACCCCTGGTCGTGTTCGCCTCTTGCTGCATAGAGgtttgtctat ... acccatgcagGAACTCCTTGTTTCCGTGGTTATGGAAGGCGCAATGGAGAGCGTAGGAGGA
EST: gi|6501870|gb|AW203229.1|AW203229
EST:     GAAGCAAGGAGTGTTGACCCCTGGTCGTGTTCGCCTCTTGCTGCATAGAG                         GAACTCCTTGTTTCCGTGGTTATGGAAGGCGCAATGGAGAGCGTAGGAGGA
genomic: GAAGCAAGGAGTGTTGACCCCTGGTCGTGTTCGCCTCTTGCTGCATAGAGgtttgtctat ... acccatgcagGAACTCCTTGTTTCCGTGGTTATGGAAGGCGCAATGGAGAGCGTAGGAGGA
EST: gi|6566557|gb|AW234200.1|AW234200
EST:     GAAGCAAGGAGTGTTGACCCCTGGTCGTGTTCGCCTCTTGCTGCATAGAG                         GAACTCCTTGTTTCCGTGGTTATGGAAGGCGCAATGGAGAGCGTAGGAGGA
genomic: GAAGCAAGGAGTGTTGACCCCTGGTCGTGTTCGCCTCTTGCTGCATAGAGgtttgtctat ... acccatgcagGAACTCCTTGTTTCCGTGGTTATGGAAGGCGCAATGGAGAGCGTAGGAGGA
EST: gi|193626800|gb|FK577140.1|FK577140
EST:     GAAGCAAGGAGTGTTGACCCCTGGTCGTGTTCGCCTCTTGCTGCATAGAG                         GAACTCCTTGTTTCCGTGGTTACGGAAGGCGCAATGGAGAGCGTAGGAGGA
genomic: GAAGCAAGGAGTGTTGACCCCTGGTCGTGTTCGCCTCTTGCTGCATAGAGgtttgtctat ... acccatgcagGAACTCCTTGTTTCCGTGGTTATGGAAGGCGCAATGGAGAGCGTAGGAGGA
EST: gi|18735629|gb|BM528877.1|BM528877
EST:     GAAGCAAGGAGTGTTGACCCCTGGTCGTGTTCGCCTCTTGCTGCATAGAG                         GAACTCCTTGTTTCCGTGGTTATGGAAGGCGCAATGGAGAGCGTAGGAGGA
genomic: GAAGCAAGGAGTGTTGACCCCTGGTCGTGTTCGCCTCTTGCTGCATAGAGgtttgtctat ... acccatgcagGAACTCCTTGTTTCCGTGGTTATGGAAGGCGCAATGGAGAGCGTAGGAGGA
EST: gi|193367249|gb|FK330339.1|FK330339
EST:     GAAGCAAGGAGTGTTGACCCCTGGTCGTGTTCGCCTCTTGCTGCATAGAG                         GAACTCCTTGTTTCCGTGGTTATGGAAGGCGCTAATTGGAGAGCGTAGGAG
genomic: GAAGCAAGGAGTGTTGACCCCTGGTCGTGTTCGCCTCTTGCTGCATAGAGgtttgtctat ... acccatgcagGAACTCCTTGTTTCCGTGGTTATGGAAGGCGC-AAT-GGAGAGCGTAGGAG
EST: gi|17023205|gb|BM094239.1|BM094239
EST:     GAAGCAAGGAGTGTTGACCCCTGGTCGTGTTCGCCTCTTGCTGCATAGAG                         GAACTCCTTGTTTCCGTGGTTATGGAAGGCGCAATGGAGAGCGTAGGAGGA
genomic: GAAGCAAGGAGTGTTGACCCCTGGTCGTGTTCGCCTCTTGCTGCATAGAGgtttgtctat ... acccatgcagGAACTCCTTGTTTCCGTGGTTATGGAAGGCGCAATGGAGAGCGTAGGAGGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gccaacctttgttattttttcaatgttaaatttcatttgttgcttacccatgcagGAACTCCTTGTTTCCGTGGTTATGGAAGGCGCAATGGAGAGCGTAGGAGGAAGTCTGTTCGTGGGTGCATTGTCAGCCCTGACCTCTCTGTTCTCAACTT
                                        tgcttac  putative branch site (score: 2)
                                          cttaccc  CT-rich tract
       tttgttattttttcaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tttgaggtactgtttttttttataactggactcaggaaacttttagccaacctttgttattttttcaatgttaaatttcatttgttgcttacccatgcagGAACTCCTTGTTTCCGTGGTTATGGAAGGCGCAATGGAGAGCGTAGGAGGAAGTCTGTTCGTGGGTGCATTGTCAGCCCTGACCTCTCTGTTCTCAACTT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgttgct