1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tgcatataaattaaacttgtttctttatattacttcaataatgataattgtattcatcatgcatgcagcacccttagtttttccaatttttttcttacagATGCCTCCTGGAGGGATTCTCACTGCTTTGTATGCATTTCACAGTCATGACATCTCAAGAGGAATACTAGCCTTAGCTTTCCTTCTTGTTGTGTTCAACT
species | Glycine max |
transcript | GLYMA15G07440.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TGTGCCTCTTCCCTATTGCTATTGGTGGCTTTTGGGCGTATGGCAACCAA ATGCCTCCTGGAGGGATTCTCACTGCTTTGTATGCATTTCACAGTCATGACEST: gi|208210799|gb|GE009116.1|GE009116
genomic: TGTGCCTCTTCCCTATTGCTATTGGTGGCTTTTGGGCGTATGGCAACCAAgtaagtaaac ... tttcttacagATGCCTCCTGGAGGGATTCTCACTGCTTTGTATGCATTTCACAGTCATGAC
EST: TGTGCCTCTTCCCTATTGCTATTGGTGGCTTTTGGGCGTATGGCAACCAA ATGCCTCCTGGAGGGATTCTCACTGCTTTGTATGCATTTCACAGTCATGACEST: gi|192298609|gb|FG989255.1|FG989255
genomic: TGTGCCTCTTCCCTATTGCTATTGGTGGCTTTTGGGCGTATGGCAACCAAgtaagtaaac ... tttcttacagATGCCTCCTGGAGGGATTCTCACTGCTTTGTATGCATTTCACAGTCATGAC
EST: TGTGCCTCTTCCCTATTGCTATTGGTGGCTTTTGGGCGTATGGCAACCAA ATGCCTCCTGGAGGGATTCTCACTGCTTTGTATGCATTTCACAGTCATGAC
genomic: TGTGCCTCTTCCCTATTGCTATTGGTGGCTTTTGGGCGTATGGCAACCAAgtaagtaaac ... tttcttacagATGCCTCCTGGAGGGATTCTCACTGCTTTGTATGCATTTCACAGTCATGAC
aattgtattcatcatgcatgcagcacccttagtttttccaatttttttcttacagATGCCTCCTGGAGGGATTCTCACTGCTTTGTATGCATTTCACAGTCATGACATCTCAAGAGGAATACTAGCCTTAGCTTTCCTTCTTGTTGTGTTCAACT
tttttccaattttttt CT-rich tract
tttttccaattttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgcatataaattaaacttgtttctttatattacttcaataatgataattgtattcatcatgcatgcagcacccttagtttttccaatttttttcttacagATGCCTCCTGGAGGGATTCTCACTGCTTTGTATGCATTTCACAGTCATGACATCTCAAGAGGAATACTAGCCTTAGCTTTCCTTCTTGTTGTGTTCAACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
tgcatat
- - - -aaattaaa
- - - - - - - - - - - - - - - - - - - - - - - - tgtattc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcatgca