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gtcatgatttatttccttgataatttggctgattatgtggcaataaccctttggttttgagtttatgtggaatttatttcagctattgcatctatgttttgtaattgcagGCATCAACTCTTTTAAGTTTTTCATGGCATACAAAGGAGCTCTTATGATCAATGATGAGCTTCTTCTGGAAGGATTTAAAAAGTGCAAGTCTCTTGGTGC
species | Glycine max |
transcript | GLYMA15G06100.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ATGGGATGAAACTGTGTCAAGAGAAATGGAGCTCATGGTCAAGGAGAAAG GCATCAACTCTTTTAAGTTTTTCATGGCATACAAAGGAGCTCTTATGATCAEST: gi|17400710|gb|BM177492.1|BM177492
genomic: ATGGGATGAAACTGTGTCAAGAGAAATGGAGCTCATGGTCAAGGAGAAAGgtcatgattt ... gtaattgcagGCATCAACTCTTTTAAGTTTTTCATGGCATACAAAGGAGCTCTTATGATCA
EST: TGAAACTGTGTCAAGAGAAATGGAGCTCATGGTCAAGGAGAAAG GCATCAACTCTTTTAAGTTTTTCATGGCATACAAAGGAGCTCTTATGATCAEST: gi|308098789|gb|HO760530.1|HO760530
genomic: TGAAACTGTGTCAAGAGAAATGGAGCTCATGGTCAAGGAGAAAGgtcatgattt ... gtaattgcagGCATCAACTCTTTTAAGTTTTTCATGGCATACAAAGGAGCTCTTATGATCA
EST: ATGGGATGAAACTGTGTCAAGAGAAATGGAGCTCATGGTCAAGGAGAAAG GCATCAACTCTTTTAAGTTTTTCATGGCATACAAAGGAGCTCTTATGATCA
genomic: ATGGGATGAAACTGTGTCAAGAGAAATGGAGCTCATGGTCAAGGAGAAAGgtcatgattt ... gtaattgcagGCATCAACTCTTTTAAGTTTTTCATGGCATACAAAGGAGCTCTTATGATCA
tttgagtttatgtggaatttatttcagctattgcatctatgttttgtaattgcagGCATCAACTCTTTTAAGTTTTTCATGGCATACAAAGGAGCTCTTATGATCAATGATGAGCTTCTTCTGGAAGGATTTAAAAAGTGCAAGTCTCTTGGTGC
tatgttttgtaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcatgatttatttccttgataatttggctgattatgtggcaataaccctttggttttgagtttatgtggaatttatttcagctattgcatctatgttttgtaattgcagGCATCAACTCTTTTAAGTTTTTCATGGCATACAAAGGAGCTCTTATGATCAATGATGAGCTTCTTCTGGAAGGATTTAAAAAGTGCAAGTCTCTTGGTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG