Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagttaatgttactctttctctttttctgttcattgagtaaaagttccatgctgggatactgattgaactggagttaatgatgatgatgattagaggttgtgacttctgaaactgtttatgtaattgagcagGCCTGAGTTACAAAGTTCGTTGGATGGATGTGCAGCTTCAGTTCATGAGTATAGAATCCCTCCTAAAGCTCTTTTGGGATTGCATTCGTATTGTCCTGTA

Basic information

species Glycine max
transcript GLYMA15G05480.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G05480.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv12s0055g00430.t01 (Vitis vinifera), 3'ss of exon 4
gttagt-----taatgttactctttctctttttctgttcat-----tgagtaaaag-----------ttccatgctgggatactga-ttgaac--tggagttaatgatgatgatgattagaggttgtgacttctgaa-actgtttatgtaat--tgagcagGCCTGAGTTACAAAGTTCGTTGGATGGATGTGCAGCTTCAGTTCATGAGTATAGAATCCCTCCTAAAGCTCTTTTGGGATTGCATTCGTATTGTCCTGTA
||||||     |||  |   | ||  | ||||| | || ||     | ||| | |            |||  |||  |  |  | | ||| ||  |||  |||   ||     ||| |  |  |  | |     ||| |    | ||   |   ||  |||| ||||||||||   |||  |||||| |||  | |||||||||||||| | | | || ||||||||||||||| | ||||||||||| ||||| || || 
gttagtcgtcataacatattttttggtatttttttattaatatagttaagttagaagttactattttttctgtgcctgcttggtaacttggacagtggtattagatatcgaattgaattaacatcttaatgcaagaataacaatcataacacactgcacagGTCTGAGTTACAGGCTTCTCTGGATGCATGCCCTGCTTCAGTTCATGAATTTCGGATTCCTCCTAAAGCTCTTCTTGGATTGCATTCATATTGCCCCGTT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgatgatgatgattagaggttgtgacttctgaaactgtttatgtaattgagcagGCCTGAGTTACAAAGTTCGTTGGATGGATGTGCAGCTTCAGTTCATGAGTATAGAATCCCTCCTAAAGCTCTTTTGGGATTGCATTCGTATTGTCCTGTA
 agttaat  putative branch site (score: 4)
                                      tttatgtaatt  TA-rich tract