1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtgctaaacaaaaattgtattaccttgttgattgctggtttaaagttgtatatctaacagtttagcctgttgtccatgtcagGCTTCTGACATTCCTACTACGGAACATGTTCCAAGGGTATTGCCAAAGAACGAGGATCCAAGTTTGGTTAATAGGAACAAAAGAATGTTGGGCCAGCTTT
species | Glycine max |
transcript | GLYMA15G05410.5 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CTCACCAAACTGTATGGTCTAAGAGAGATAACGATCAAAGAACTTCAAAG GCTTCTGACATTCCTACTACGGAACATGTTCEST: gi|207757889|gb|GD727697.1|GD727697
genomic: CTCACCAAACTGTATGGTCTAAGAGAGATAACAATCAAAGAACTTCAAAGgtgctaaaca ... tccatgtcagGCTTCTGACATTCCTACTACGGAACATGTTC
EST: CTCACCAAACTGTATGGTCTAAGAGAGATAACAATCAAAGAACTTCAAAG GCTTCTGACATTEST: gi|208044198|gb|GD839222.1|GD839222
genomic: CTCACCAAACTGTATGGTCTAAGAGAGATAACAATCAAAGAACTTCAAAGgtgctaaaca ... tccatgtcagGCTTCTGACATT
EST: CTCACCAAACTGTATGGTCTAAGAGAGATAACAATCAAAGAACTTCAAAG GCTTCTGACATTCCTACTACGGAACATGTTCCAAGGGTATTGCCAAAGAACEST: gi|208235308|gb|GE034618.1|GE034618
genomic: CTCACCAAACTGTATGGTCTAAGAGAGATAACAATCAAAGAACTTCAAAGgtgctaaaca ... tccatgtcagGCTTCTGACATTCCTACTACGGAACATGTTCCAAGGGTATTGCCAAAGAAC
EST: CTCACCAAACTGTATGGTCTAAGAGAGATAACAATCAAAGAACTTCAAAG GCTTCTGACATTCCTACTACGGAACATGTTCCAAGGGTATTGCCAAAGAACEST: gi|213590293|gb|DB963856.1|DB963856
genomic: CTCACCAAACTGTATGGTCTAAGAGAGATAACAATCAAAGAACTTCAAAGgtgctaaaca ... tccatgtcagGCTTCTGACATTCCTACTACGGAACATGTTCCAAGGGTATTGCCAAAGAAC
EST: CTCACCAAACTGTATGGTCTAAGAGAGATAACAATCAAAGAACTTCAAAG GCTTCTGACATTCCTACTACGGAACATGTTCCAAGGGTATTGCEST: gi|208123002|gb|GD923232.1|GD923232
genomic: CTCACCAAACTGTATGGTCTAAGAGAGATAACAATCAAAGAACTTCAAAGgtgctaaaca ... tccatgtcagGCTTCTGACATTCCTACTACGGAACATGTTCCAAGGGTATTGC
EST: CTCACCAAACTGTATGGTCTAAGAGAGATAACAATCAAAGAACTTCAAAG GCTTCTGACATTCCTACTACGGAACATGTTCCAAGGGTATTGCCAAAGAACEST: gi|254317253|gb|GR826198.1|GR826198
genomic: CTCACCAAACTGTATGGTCTAAGAGAGATAACAATCAAAGAACTTCAAAGgtgctaaaca ... tccatgtcagGCTTCTGACATTCCTACTACGGAACATGTTCCAAGGGTATTGCCAAAGAAC
EST: CTCACCAAACTGTATGGTCTAAGAGAGATAACAATCAAAGAACTTCAAAG GCTTCTGACATTCCTACTACGGAACATGTTCCAAGGGTATTGCCAAAGAAC
genomic: CTCACCAAACTGTATGGTCTAAGAGAGATAACAATCAAAGAACTTCAAAGgtgctaaaca ... tccatgtcagGCTTCTGACATTCCTACTACGGAACATGTTCCAAGGGTATTGCCAAAGAAC
ttgattgctggtttaaagttgtatatctaacagtttagcctgttgtccatgtcagGCTTCTGACATTCCTACTACGGAACATGTTCCAAGGGTATTGCCAAAGAACGAGGATCCAAGTTTGGTTAATAGGAACAAAAGAATGTTGGGCCAGCTTT
atctaac putative branch site (score: 2)
tttaaagttgtatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgctaaacaaaaattgtattaccttgttgattgctggtttaaagttgtatatctaacagtttagcctgttgtccatgtcagGCTTCTGACATTCCTACTACGGAACATGTTCCAAGGGTATTGCCAAAGAACGAGGATCCAAGTTTGGTTAATAGGAACAAAAGAATGTTGGGCCAGCTTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA