Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gtggtgagaaaacagaattatcacatcatttcatgtttcaaatggcttagggatgagtctcacttcttatgtttgatttgcctctgcaatcgatgtatagGTATGCATATTCGGAGGAAGTGGGAGAAGATTCTGATGACGAAGAAGCTCAATCTCTCACTAAGGGAAAGCAGGAAGGTCAGGGTGAACTAAGTTTAGTT

Basic information

species Glycine max
transcript GLYMA15G05370.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58016452|gb|CX703194.1|CX703194
EST:     TTACTCTGTGTTATATGCTATCTCTGGGCCCCATCCCAAAGCTCTCAAAG                         GTATGCATATTCGGAGGAAGTGGGAGAAGATTCTGATGACGAAGAAGCTCA
genomic: TTACTCTGTGTTATATGCTATCTCTGGGCCCCATCCCAAAGCTCTCAAAGgtgaattgta ... cgatgtatagGTATGCATATTCGGAGGAAGTGGGAGAAGATTCTGATGACGAAGAAGCTCA
EST: gi|26269350|gb|CA820413.1|CA820413
EST:     TTACTCTGTGTTATATGTTATCTCTGGGCCCCATCCCAAAGCTCTCAAAG                         GTATGCGTATTCGGAGGAAGTGGGAGAAGATTCTGATGACGAAGAAGCTCA
genomic: TTACTCTGTGTTATATGCTATCTCTGGGCCCCATCCCAAAGCTCTCAAAGgtgaattgta ... cgatgtatagGTATGCATATTCGGAGGAAGTGGGAGAAGATTCTGATGACGAAGAAGCTCA
EST: gi|58018482|gb|CX705224.1|CX705224
EST:     TTACTCTGTGTTATATGCTATCTCTGGGCCCCATCCCAAAGCTCTCAAAG                         GTATGCATATTCGGAGGAAGTGGGAGAAGATTCTGATGACGAAGAAGCTCA
genomic: TTACTCTGTGTTATATGCTATCTCTGGGCCCCATCCCAAAGCTCTCAAAGgtgaattgta ... cgatgtatagGTATGCATATTCGGAGGAAGTGGGAGAAGATTCTGATGACGAAGAAGCTCA
EST: gi|58019533|gb|CX706275.1|CX706275
EST:     TTACTCTGTGTTATATGCTATCTCTGGGCCCCATCCCAAAGCTCTCAAAG                         GTATGCATATTCGGAGGAAGTGGGAGAAGATTCTGATGACGAAGAAGCTCA
genomic: TTACTCTGTGTTATATGCTATCTCTGGGCCCCATCCCAAAGCTCTCAAAGgtgaattgta ... cgatgtatagGTATGCATATTCGGAGGAAGTGGGAGAAGATTCTGATGACGAAGAAGCTCA
EST: gi|31310326|gb|CD395529.1|CD395529
EST:     TTACTCTGTGTTATATGCTATCTCTGGGCCCCATCCCAAAGCTCTCAAAG                         GTATGCATATTCGGAGGAAGTGGGAGAAGATTCTGATGACGAAGAAGCTCA
genomic: TTACTCTGTGTTATATGCTATCTCTGGGCCCCATCCCAAAGCTCTCAAAGgtgaattgta ... cgatgtatagGTATGCATATTCGGAGGAAGTGGGAGAAGATTCTGATGACGAAGAAGCTCA
EST: gi|51336251|gb|CO980117.1|CO980117
EST:     TTACTCTGTGTTATATGCTATCTCTGGGCCCCATCCCAAAGCTCTCAAAG                         GTATGCATATTCGGAGGAAGTGGGAGAAGATTCTGATGACGAAGAAGCTCA
genomic: TTACTCTGTGTTATATGCTATCTCTGGGCCCCATCCCAAAGCTCTCAAAGgtgaattgta ... cgatgtatagGTATGCATATTCGGAGGAAGTGGGAGAAGATTCTGATGACGAAGAAGCTCA
EST: gi|9439998|gb|BE440509.1|BE440509
EST:     TTACTCTGTGTTATATGCTATCTCTGGGCCCCATCCCAAAGCTCTCAAAG                         GTATGCATATTCGGAGGAAGTGGGAGAAGATTCTGATGACGAAGAAGCTCA
genomic: TTACTCTGTGTTATATGCTATCTCTGGGCCCCATCCCAAAGCTCTCAAAGgtgaattgta ... cgatgtatagGTATGCATATTCGGAGGAAGTGGGAGAAGATTCTGATGACGAAGAAGCTCA
EST: gi|209723096|gb|BW662472.1|BW662472
EST:     TTACTCTGTGTTATATGCTATCTCTGGGCCCCATCCCAAAGCTCTCAAAG                         GTATGCATATTCGGAGGAAGTGGGAGAAGATTCTGATGACGAAGAAGCTCA
genomic: TTACTCTGTGTTATATGCTATCTCTGGGCCCCATCCCAAAGCTCTCAAAGgtgaattgta ... cgatgtatagGTATGCATATTCGGAGGAAGTGGGAGAAGATTCTGATGACGAAGAAGCTCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttagggatgagtctcacttcttatgtttgatttgcctctgcaatcgatgtatagGTATGCATATTCGGAGGAAGTGGGAGAAGATTCTGATGACGAAGAAGCTCAATCTCTCACTAAGGGAAAGCAGGAAGGTCAGGGTGAACTAAGTTTAGTT
                     ttatgttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtggtgagaaaacagaattatcacatcatttcatgtttcaaatggcttagggatgagtctcacttcttatgtttgatttgcctctgcaatcgatgtatagGTATGCATATTCGGAGGAAGTGGGAGAAGATTCTGATGACGAAGAAGCTCAATCTCTCACTAAGGGAAAGCAGGAAGGTCAGGGTGAACTAAGTTTAGTT

gtggtga
- - - - -aaacagaa
- - - - - - - - - - -cacatca
- - - - - - - - - - - - - - - tcatgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgatttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctctgca