1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...aactgcttaagaactaatgagcaatgcgtaagtatgtctctgcacttgttgaataatagcttgtgagcatgatctattccatcataatgtacacatgcagATACCTATTAAAGCCCCTGGAAGAGCTCGTGGGGAACTGGAAATAACATATTTGGACGAAGAACTGCG
species | Glycine max |
transcript | GLYMA15G05210.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ATCCAAGGAAAGTGGCTGTAAAATTTGATACTTTCAAAATTGGAGGCATT ATACCTATTAAAGCCCCTGGAAGAGCTCGTGGGGAACTGGAAATAACATATEST: gi|31458564|gb|CD400592.1|CD400592
genomic: ATCCAAGGAAAGTGGCTGTAAAATTTGATACTTTCAAAATTGGAGGCATTgtaagtattc ... acacatgcagATACCTATTAAAGCCCCTGGAAGAGCTCGTGGGGAACTGGAAATAACATAT
EST: ATCCAAGGAAAGTGGCTGTAAAATTTGATACTTTCAAAATTGGAGGCATT ATACCTATTAAAGCCCCTGGAAGAGCTCGTGGGGAACTGGAAATAACATATEST: gi|31458909|gb|CD400937.1|CD400937
genomic: ATCCAAGGAAAGTGGCTGTAAAATTTGATACTTTCAAAATTGGAGGCATTgtaagtattc ... acacatgcagATACCTATTAAAGCCCCTGGAAGAGCTCGTGGGGAACTGGAAATAACATAT
EST: ATCCAAGGAAAGTGGCTGTAAAATTTGATACTTTCAAAATTGGAGGCATT ATACCTATTAAAGCCCCTGGAAGAGCTCGTGGGGAACTGGAAATAACATATEST: gi|17153711|gb|BM143644.1|BM143644
genomic: ATCCAAGGAAAGTGGCTGTAAAATTTGATACTTTCAAAATTGGAGGCATTgtaagtattc ... acacatgcagATACCTATTAAAGCCCCTGGAAGAGCTCGTGGGGAACTGGAAATAACATAT
EST: ATCCAAGGAAAGTGGCTGTAAAATTTGATACTTTCAAAATTGGAGGCATT ATACCTATTAAAGCCCCTGGAAGAGCTCGTGGGGAACTGGAAATAACATATEST: gi|213593886|gb|DB961886.1|DB961886
genomic: ATCCAAGGAAAGTGGCTGTAAAATTTGATACTTTCAAAATTGGAGGCATTgtaagtattc ... acacatgcagATACCTATTAAAGCCCCTGGAAGAGCTCGTGGGGAACTGGAAATAACATAT
EST: ATCCAAGGAAAGTGGCTGTAAAATTTGATACTTTCAAAATTGGAGGCATT ATACCTATTAAAGCCCCT
genomic: ATCCAAGGAAAGTGGCTGTAAAATTTGATACTTTCAAAATTGGAGGCATTgtaagtattc ... acacatgcagATACCTATTAAAGCCCCT
ttgttgaataatagcttgtgagcatgatctattccatcataatgtacacatgcagATACCTATTAAAGCCCCTGGAAGAGCTCGTGGGGAACTGGAAATAACATATTTGGACGAAGAACTGCG
aataata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aactgcttaagaactaatgagcaatgcgtaagtatgtctctgcacttgttgaataatagcttgtgagcatgatctattccatcataatgtacacatgcagATACCTATTAAAGCCCCTGGAAGAGCTCGTGGGGAACTGGAAATAACATATTTGGACGAAGAACTGCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
-actgctt
- - - - - - - - - - gcaatgc
- - - - - - - - - - - - - - - - - - -ctctgca
- - - - - - - - - - - - - - - - - - - - - - cttgttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcttgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agcatga