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gtaagagggttatctatttgctcataatgttatatttctgatgttcactcatgattttactgactttatacagatggcataacttgctatcatcctatatgtgataaataagatacagcatatagaactaagtttgatttgataaaagttctgccacaaaatctttgtttaatcagGTCATTGTTGCTGACAACTACTTCACTGGATCCAAGGATAACCTCAAAAAGTGGATTGGTCATCCAAGATTTGAGCTTATCCGTCATG
species | Glycine max |
transcript | GLYMA15G04500.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TCATTGGGTCTCACTTAGTTGACAGATTGATGGAAAATGNNNNNNNTGAG GTCATTGTTGCTGACAACTACTTCACTGGATCCAAGGATAACCTCAAAAAGEST: gi|8827206|gb|BE210936.1|BE210936
genomic: TCATTGGGTCTCACTTAGTTGACAGATTGATGGAAAATGAAAAAAATGAGgtaagagggt ... gtttaatcagGTCATTGTTGCTGACAACTACTTCACTGGATCCAAGGATAACCTCAAAAAG
EST: TCATTGGGTCTCACTTAGTTGACAGATTGATGGAAAATGNNNNNNNTGAG GTCATTGTTGCTGACAACTACTTCACTGGATCCAAGGATAACCTCAAAAAGEST: gi|151412093|gb|EV281905.1|EV281905
genomic: TCATTGGGTCTCACTTAGTTGACAGATTGATGGAAAATGAAAAAAATGAGgtaagagggt ... gtttaatcagGTCATTGTTGCTGACAACTACTTCACTGGATCCAAGGATAACCTCAAAAAG
EST: TCATTGGGTCTCACTTAGTTGACAGATTGATGGAAAATGNNNNNNNTGAG GTCATTGTTGCTGACAACTACTTCACTGGATCCAAGGATAACCTCAAAAAGEST: gi|192316740|gb|FK006443.1|FK006443
genomic: TCATTGGGTCTCACTTAGTTGACAGATTGATGGAAAATGAAAAAAATGAGgtaagagggt ... gtttaatcagGTCATTGTTGCTGACAACTACTTCACTGGATCCAAGGATAACCTCAAAAAG
EST: TCATTGGGTCTCACTTAGTTGACAGATTGATGGAAAGTGNNNNNNNTGAG GTCATTGTTGCTGACAACTACTTCACTGGATCCAAGGATAACCTCAAAAAGEST: gi|213591579|gb|DB955787.1|DB955787
genomic: TCATTGGGTCTCACTTAGTTGACAGATTGATGGAAAATGAAAAAAATGAGgtaagagggt ... gtttaatcagGTCATTGTTGCTGACAACTACTTCACTGGATCCAAGGATAACCTCAAAAAG
EST: TCATTGGGTCTCACTTAGTTGACAGATTGATGGAAAATGNNNNNNNTGAG GTCATTGTTGCTGACAACTACTTCACTGGATCCAAGGATAACCTCAAAAAGEST: gi|213592188|gb|DB965979.1|DB965979
genomic: TCATTGGGTCTCACTTAGTTGACAGATTGATGGAAAATGAAAAAAATGAGgtaagagggt ... gtttaatcagGTCATTGTTGCTGACAACTACTTCACTGGATCCAAGGATAACCTCAAAAAG
EST: TCATTGGGTCTCACTTAGTTGACAGATTGATGGAAAATGNNNNNNNTGAG GTCATTGTTGCTGACAACTACTTCACTGGATCCAAGGATAACCTCAAAAAGEST: gi|192316741|gb|FK006444.1|FK006444
genomic: TCATTGGGTCTCACTTAGTTGACAGATTGATGGAAAATGAAAAAAATGAGgtaagagggt ... gtttaatcagGTCATTGTTGCTGACAACTACTTCACTGGATCCAAGGATAACCTCAAAAAG
EST: TCATTGGGTCTCACTTAGTTGACAGATTGATGGAAAGTGNNNNNNNTGAG GTCATTGTTGCTGACAACTACTTCACTGGATCCAAGGATAACCTCAAAAAGEST: gi|16279667|gb|BI943554.1|BI943554
genomic: TCATTGGGTCTCACTTAGTTGACAGATTGATGGAAAATGAAAAAAATGAGgtaagagggt ... gtttaatcagGTCATTGTTGCTGACAACTACTTCACTGGATCCAAGGATAACCTCAAAAAG
EST: TCATTGGGTCTCACTTAGTTGACAGATTGATGGAAAATGNNNNNNNTGAG GTCATTGTTGCTGACAACTACTTCACTGGATCCAAGGATAACCTCAAAAAGEST: gi|192317198|gb|FK007909.1|FK007909
genomic: TCATTGGGTCTCACTTAGTTGACAGATTGATGGAAAATGAAAAAAATGAGgtaagagggt ... gtttaatcagGTCATTGTTGCTGACAACTACTTCACTGGATCCAAGGATAACCTCAAAAAG
EST: TCATTGGGTCTCACTTAGTTGACAGATTGATGGAAAATGNNNNNNNTGAG GTCATTGTTGCTGACAACTACTTCACTGGATCCAAGGATAACCTCAAAAAGEST: gi|192296657|gb|FG991225.1|FG991225
genomic: TCATTGGGTCTCACTTAGTTGACAGATTGATGGAAAATGAAAAAAATGAGgtaagagggt ... gtttaatcagGTCATTGTTGCTGACAACTACTTCACTGGATCCAAGGATAACCTCAAAAAG
EST: TCATTGGGTCTCACTTAGTTGACAGATTGATGGAAAATGNNNNNNNTGAG GTCATTGTTGCTGACAACTACTTCACTGGATCCAAGGATAACCTCAAAAAG
genomic: TCATTGGGTCTCACTTAGTTGACAGATTGATGGAAAATGAAAAAAATGAGgtaagagggt ... gtttaatcagGTCATTGTTGCTGACAACTACTTCACTGGATCCAAGGATAACCTCAAAAAG
atagaactaagtttgatttgataaaagttctgccacaaaatctttgtttaatcagGTCATTGTTGCTGACAACTACTTCACTGGATCCAAGGATAACCTCAAAAAGTGGATTGGTCATCCAAGATTTGAGCTTATCCGTCATG
atttgat putative branch site (score: 5)
tctttgttt putative PPT
aaaatctttgtttaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagagggttatctatttgctcataatgttatatttctgatgttcactcatgattttactgactttatacagatggcataacttgctatcatcctatatgtgataaataagatacagcatatagaactaagtttgatttgataaaagttctgccacaaaatctttgtttaatcagGTCATTGTTGCTGACAACTACTTCACTGGATCCAAGGATAACCTCAAAAAGTGGATTGGTCATCCAAGATTTGAGCTTATCCGTCATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT