Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacaaagtgttcaattgcccttgctttatattcttttgttataaattctactttgtgaagttgcttataatggcaaaaatcatatcatttactaaatgttttacttcctagTTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTAAAAGTTATTGCATGCATTGGGGAGACTCTCGAACAGCGTGAAGCTGGTACAACAACGG

Basic information

species Glycine max
transcript GLYMA15G04290.2
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G04290.2 (Glycine max), 3'ss of exon 4
lower sequence: Vv06s0004g04800.t01 (Vitis vinifera), 3'ss of exon 4
---------------gtacaaagtgttcaatt---gcccttgctttatattcttttgttataaattctactttgtgaagttgcttataatggcaaaaatcatatcatttactaaatgttttacttcctagTTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTAAAAGTTATTGCATGCATTGGGGAGACTCTCGAACAGCGTGAAGCTGGTACAACAACGG
               ||   |  | | ||  |     | ||||     |   ||||| | ||   | |  ||  ||| | ||  |    || |        ||||  ||  | |   || |   | | ||||||| |||||||||||||| |||||||||   |||||  | ||||| ||||| ||  ||||||||||||| || ||||| ||| | ||  | |||| ||
gtaaactatggtgcagtgacacatatgcagctttaatctttgcacgtcaactttttgct-taggcttttattgttgatgatgtgtcatctgcctttg--tgtatctgttctttataattgtgaatgc-agTTTGTTGGAGATAAAGTTGCATATGCACTTTCCCAAGGCTTGAAAGTGATTGCTTGTGTTGGGGAGACTCTTGAGCAGCGAGAATCGGGATCTACAATGG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208286584|gb|GE088672.1|GE088672
EST:     CTTTTAAATGAATCAAATGAG                         TTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTAAAAGTTATT
genomic: CTTTTAAATGAATCAAATGAGgtacaaagtg ... tacttcctagTTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTAAAAGTTATT
EST: gi|151402600|gb|EV272413.1|EV272413
EST:     TTATTATTGGTCACTCTGAACGGAGGCAGCTTTTAAATGAATCAAATGAG                         TTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTAAAAGTTATT
genomic: TTATTATTGGTCACTCTGAACGGAGGCAGCTTTTAAATGAATCAAATGAGgtacaaagtg ... tacttcctagTTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTAAAAGTTATT
EST: gi|298172150|gb|HO021742.1|HO021742
EST:     TTATTATTGGTCACTCTGAACGGAGGCAGCTTTTAAATGAATCAAACGAG                         TTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTAAAAGTTATT
genomic: TTATTATTGGTCACTCTGAACGGAGGCAGCTTTTAAATGAATCAAATGAGgtacaaagtg ... tacttcctagTTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTAAAAGTTATT
EST: gi|193713336|gb|FK654013.1|FK654013
EST:     TATTATTGGTCACTCTGAACGGAGGCAGCTTTTTAAATGAATCAAATGAG                         TTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTAAAAGTTATT
genomic: TATTATTGGTCACTCTGAACGGAGGCAGCTTTT-AAATGAATCAAATGAGgtacaaagtg ... tacttcctagTTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTAAAAGTTATT
EST: gi|192330567|gb|FK022698.1|FK022698
EST:     TTATTATTGGTCACTCTGAACGGAGGCAGCTTTTAAATGAATCAAATGAG                         TTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTAAAAGTTATT
genomic: TTATTATTGGTCACTCTGAACGGAGGCAGCTTTTAAATGAATCAAATGAGgtacaaagtg ... tacttcctagTTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTAAAAGTTATT
EST: gi|193533278|gb|FK491082.1|FK491082
EST:     TTATTATTGGTCACTCTGAACGGAGGCAGCTTTTAAATGAATCAAATGAG                         TTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTAAAAGTTATT
genomic: TTATTATTGGTCACTCTGAACGGAGGCAGCTTTTAAATGAATCAAATGAGgtacaaagtg ... tacttcctagTTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTAAAAGTTATT
EST: gi|193623333|gb|FK577791.1|FK577791
EST:     TATTATTGGTCACTCTGAGCGGAGGCAGTCTTTTAAATGAATCAAATGAG                         TTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTAAAAGTTATT
genomic: TATTATTGGTCACTCTGAACGGAGGCAG-CTTTTAAATGAATCAAATGAGgtacaaagtg ... tacttcctagTTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTAAAAGTTATT
EST: gi|209714947|gb|BW650793.1|BW650793
EST:     TTATTATTGGTCACTCTGAACGGAGGCAGCTTTTAAATGAATCAAATGAG                         TTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTAAAAGTTATT
genomic: TTATTATTGGTCACTCTGAACGGAGGCAGCTTTTAAATGAATCAAATGAGgtacaaagtg ... tacttcctagTTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTAAAAGTTATT
EST: gi|298167922|gb|HO013185.1|HO013185
EST:     TTATTATTGGTCACTCTGAACGGAGGCAGCTTTTAAATGAATCAAACGAG                         TTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTAAAAGTTATT
genomic: TTATTATTGGTCACTCTGAACGGAGGCAGCTTTTAAATGAATCAAATGAGgtacaaagtg ... tacttcctagTTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTAAAAGTTATT
EST: gi|207770850|gb|GD743402.1|GD743402
EST:     TTATTATTGGTCACTCTGAACGGAGGCAGCTTTTAAATGAATCAAATGAG                         TTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTAAAAGTTATT
genomic: TTATTATTGGTCACTCTGAACGGAGGCAGCTTTTAAATGAATCAAATGAGgtacaaagtg ... tacttcctagTTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTAAAAGTTATT
EST: gi|193711039|gb|FK644726.1|FK644726
EST:     TTATTATTGGTCACTCTGAGCGGAGGCAGCTTTTAAATGAATCAAATGAG                         TTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTAAAAGTTATT
genomic: TTATTATTGGTCACTCTGAACGGAGGCAGCTTTTAAATGAATCAAATGAGgtacaaagtg ... tacttcctagTTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTAAAAGTTATT
EST: gi|193459587|gb|FK424760.1|FK424760
EST:     CTTTTAAATGAATACAAATGTAG                         TTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTAAAAGTTAT
genomic: CTTTTAAATGAAT-CAAATG-AGgtacaaagtg ... tacttcctagTTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTAAAAGTTAT
EST: gi|208339967|gb|GE134031.1|GE134031
EST:     CTTTTAAATGAATCAAATGAG                         TTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTAAAAGTTATT
genomic: CTTTTAAATGAATCAAATGAGgtacaaagtg ... tacttcctagTTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTAAAAGTTATT
EST: gi|208287401|gb|GE088355.1|GE088355
EST:     TTATTATTGGTCACTCTGAACGGAGGCAGCTTTTAAATGAATCAAATGAG                         TTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTAAAAGTTATT
genomic: TTATTATTGGTCACTCTGAACGGAGGCAGCTTTTAAATGAATCAAATGAGgtacaaagtg ... tacttcctagTTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTAAAAGTTATT
EST: gi|207776286|gb|GD749607.1|GD749607
EST:     TTATTATTGGTCACTCTGAACGGAGGCAGCTTTTAAATGAATCAAATGAG                         TTTGTGGGAGATAAAGTTGCCTAATAGAACACTTCAACAAGG
genomic: TTATTATTGGTCACTCTGAACGGAGGCAGCTTTTAAATGAATCAAATGAGgtacaaagtg ... tacttcctagTTTGTGGGAGATAAAGTTGCCTA-T-G--CACTTCAACAAGG
EST: gi|193665043|gb|FK612053.1|FK612053
EST:     TTATTATTGGTCACTCTGAACGGAGGCAGCTTTTAAATGAATCAAATGAG                         TTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTAAAAGTTATT
genomic: TTATTATTGGTCACTCTGAACGGAGGCAGCTTTTAAATGAATCAAATGAGgtacaaagtg ... tacttcctagTTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTAAAAGTTATT
EST: gi|193696613|gb|FK640247.1|FK640247
EST:     TTATTATTGGTCACTCTGAACGGAGGCAGCTTTTAAATGAATCAAATGAG                         TTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTAAAAGTTATT
genomic: TTATTATTGGTCACTCTGAACGGAGGCAGCTTTTAAATGAATCAAATGAGgtacaaagtg ... tacttcctagTTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTAAAAGTTATT
EST: gi|208185737|gb|GD985358.1|GD985358
EST:     TTATTATTGGTCACTCTGAACGGAGGCAGCTTTTAAATGAATCAAATGAG                         TTTGTGGGAGATAAAGTTGCCTATAGACACTTCAACAAGG
genomic: TTATTATTGGTCACTCTGAACGGAGGCAGCTTTTAAATGAATCAAATGAGgtacaaagtg ... tacttcctagTTTGTGGGAGATAAAGTTGCCTAT-G-CACTTCAACAAGG
EST: gi|33388216|gb|CA851423.1|CA851423
EST:     TTATTATTGGTCACTCTGAACGGAGGCAGCTTTTAAATGAATCAAACGAG                         TTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTAAAAGTTATT
genomic: TTATTATTGGTCACTCTGAACGGAGGCAGCTTTTAAATGAATCAAATGAGgtacaaagtg ... tacttcctagTTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTAAAAGTTATT
EST: gi|17020677|gb|BM091711.1|BM091711
EST:     TTATTATTGGTCACTCTGAACGGAGGCAGCTTTTAAATGAATCAAACGAG                         TTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTAAAAGTTATT
genomic: TTATTATTGGTCACTCTGAACGGAGGCAGCTTTTAAATGAATCAAATGAGgtacaaagtg ... tacttcctagTTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTAAAAGTTATT
EST: gi|193421524|gb|FK389655.1|FK389655
EST:     ATTATTGGTCACTCTGAACGGTAGGCAGCTTTTTAAATGAATCAAATGAG                         TTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTAAAAGTTATT
genomic: ATTATTGGTCACTCTGAACGG-AGGCAGC-TTTTAAATGAATCAAATGAGgtacaaagtg ... tacttcctagTTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTAAAAGTTATT
EST: gi|19935084|gb|BQ080114.1|BQ080114
EST:     TTATTATTGGTCACTCTGAACGGAGGCAGCTTTTAAATGAATCAAATGAG                         TTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTAAAAGTTATT
genomic: TTATTATTGGTCACTCTGAACGGAGGCAGCTTTTAAATGAATCAAATGAGgtacaaagtg ... tacttcctagTTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTAAAAGTTATT
EST: gi|6455637|gb|AW186320.1|AW186320
EST:     TTATTATTGGTCACTCTGAACGGAGGCAGCTTTTAAATGAATCAAACGAG                         TTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTAAAAGTTATT
genomic: TTATTATTGGTCACTCTGAACGGAGGCAGCTTTTAAATGAATCAAATGAGgtacaaagtg ... tacttcctagTTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTAAAAGTTATT
EST: gi|298187234|gb|HO034383.1|HO034383
EST:     TTATTATTGGTCACTCTGAACGGAGGCAGCTTTTAAATGAATCAAACGAG                         TTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTAAAAGTTATT
genomic: TTATTATTGGTCACTCTGAACGGAGGCAGCTTTTAAATGAATCAAATGAGgtacaaagtg ... tacttcctagTTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTAAAAGTTATT
EST: gi|15203172|gb|BI425940.1|BI425940
EST:     TTATTATTGGTCACTCTGAACGGAGGCAGCTTTTAAATGAATCAAATGAG                         TTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTAAAAGTTATT
genomic: TTATTATTGGTCACTCTGAACGGAGGCAGCTTTTAAATGAATCAAATGAGgtacaaagtg ... tacttcctagTTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTAAAAGTTATT
EST: gi|213598487|gb|DB958127.1|DB958127
EST:     TTATTATTGGTCACTCTGAACGGAGGCAGCTTTTAAATGAATCAAATGAG                         TTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTAAAAGTTATT
genomic: TTATTATTGGTCACTCTGAACGGAGGCAGCTTTTAAATGAATCAAATGAGgtacaaagtg ... tacttcctagTTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTAAAAGTTATT
EST: gi|24205173|gb|BU964426.1|BU964426
EST:     TTATTATTGGTCACTCTGAACGGAGGCAGCTTTTAAATGAATCAAACGAG                         TTTGTGGGAGATAAAGTTGGCTATGCACTTCA
genomic: TTATTATTGGTCACTCTGAACGGAGGCAGCTTTTAAATGAATCAAATGAGgtacaaagtg ... tacttcctagTTTGTGGGAGATAAAGTTGCCTATGCACTTCA
EST: gi|208285272|gb|GE086030.1|GE086030
EST:     TTATTATTGGTCACTCTGAACGGAGGCAGCTTTTAAATGAATCAAATGAG                         TTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTAAAAGTTATT
genomic: TTATTATTGGTCACTCTGAACGGAGGCAGCTTTTAAATGAATCAAATGAGgtacaaagtg ... tacttcctagTTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTAAAAGTTATT
EST: gi|298197518|gb|HO044997.1|HO044997
EST:     TTATTATTGGTCACTCTGAACGGAGGCAGCTTTTAAATGAATCAAACGAG                         TTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTAAAAGTTATT
genomic: TTATTATTGGTCACTCTGAACGGAGGCAGCTTTTAAATGAATCAAATGAGgtacaaagtg ... tacttcctagTTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTAAAAGTTATT
EST: gi|298173782|gb|HO017118.1|HO017118
EST:     TTATTATTGGTCACTCTGAACGGAGGCAGCTTTTAAATGAATCAAACGAG                         TTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTAAAAGTTATT
genomic: TTATTATTGGTCACTCTGAACGGAGGCAGCTTTTAAATGAATCAAATGAGgtacaaagtg ... tacttcctagTTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTAAAAGTTATT
EST: gi|16997158|gb|BM086530.1|BM086530
EST:     TTATTATTGGTCACTCTGAACGGAGGCAGCTTTTAAATGAATCAAACGAG                         TTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTAAAAGTTATT
genomic: TTATTATTGGTCACTCTGAACGGAGGCAGCTTTTAAATGAATCAAATGAGgtacaaagtg ... tacttcctagTTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTAAAAGTTATT
EST: gi|298195199|gb|HO043727.1|HO043727
EST:     TTATTATTGGTCACTCTGAACGGAGGCAGCTTTCAAATGAATCAAGCGAG                         TTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTAAAAGTTATT
genomic: TTATTATTGGTCACTCTGAACGGAGGCAGCTTTTAAATGAATCAAATGAGgtacaaagtg ... tacttcctagTTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTAAAAGTTATT
EST: gi|193698321|gb|FK641520.1|FK641520
EST:     TTATTATTGGTCACTCTGAACGGAGGCAGCTTTTAAATGAATCAAATGAG                         TTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTAAAAGTTATT
genomic: TTATTATTGGTCACTCTGAACGGAGGCAGCTTTTAAATGAATCAAATGAGgtacaaagtg ... tacttcctagTTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTAAAAGTTATT
EST: gi|7326922|gb|AW620720.1|AW620720
EST:     TTATTATTGGTCACTCTGAACGGAGGCAGCTATTAAATGAATCAAATGAG                         TGTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTAAAAGTTATT
genomic: TTATTATTGGTCACTCTGAACGGAGGCAGCTTTTAAATGAATCAAATGAGgtacaaagtg ... tacttcctagTTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTAAAAGTTATT
EST: gi|298186175|gb|HO036808.1|HO036808
EST:     TTATTATTGGTCACTCTGAACGGAGGCAGCTTTTAAATGAATCAAACGAG                         TTTGTGTGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTAAAAGTTATT
genomic: TTATTATTGGTCACTCTGAACGGAGGCAGCTTTTAAATGAATCAAATGAGgtacaaagtg ... tacttcctagTTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTAAAAGTTATT
EST: gi|207830130|gb|GD801486.1|GD801486
EST:     AATGAATCAAATGAG                         TTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTAAAAGTTATT
genomic: AATGAATCAAATGAGgtacaaagtg ... tacttcctagTTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTAAAAGTTATT
EST: gi|298182052|gb|HO026227.1|HO026227
EST:     TTATTATTGGTCACTCTGAACGGAGGCAGCTTTTAAATGAATCAAACGAG                         TTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTAAAAGTTATT
genomic: TTATTATTGGTCACTCTGAACGGAGGCAGCTTTTAAATGAATCAAATGAGgtacaaagtg ... tacttcctagTTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTAAAAGTTATT
EST: gi|193543002|gb|FK500193.1|FK500193
EST:     TTATTATTGGTCACTCTGAACGGAGGCAGCTTTTAAATGAATCAAATGAG                         TTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTAAAAGTTATT
genomic: TTATTATTGGTCACTCTGAACGGAGGCAGCTTTTAAATGAATCAAATGAGgtacaaagtg ... tacttcctagTTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTAAAAGTTATT
EST: gi|16346985|gb|BI972580.1|BI972580
EST:     TTATTATTGGTCACTCTGAACGGAGGCAGCTTTTAAATGAATCAAACGAG                         TTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTAAAAGTTATT
genomic: TTATTATTGGTCACTCTGAACGGAGGCAGCTTTTAAATGAATCAAATGAGgtacaaagtg ... tacttcctagTTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTAAAAGTTATT
EST: gi|208176812|gb|GD975239.1|GD975239
EST:     TTTTAAATGAATCAAATGAG                         TTTGTGGGAGTATAAAGTTGCCTATGCACTTCAACAAGGTCTAAAAGTTAT
genomic: TTTTAAATGAATCAAATGAGgtacaaagtg ... tacttcctagTTTGTGGGAG-ATAAAGTTGCCTATGCACTTCAACAAGGTCTAAAAGTTAT
EST: gi|18735370|gb|BM528727.1|BM528727
EST:     TTATTATTGGTCACTCTGAACGGAGGCAGCTTTTAAATGAATCAAACGAG                         TTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTAAAAGTTATT
genomic: TTATTATTGGTCACTCTGAACGGAGGCAGCTTTTAAATGAATCAAATGAGgtacaaagtg ... tacttcctagTTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTAAAAGTTATT
EST: gi|7145629|gb|AW507551.1|AW507551
EST:     TTATTATTGGTCACTCTGAACGGAGGCAGCTTTTAAATGAATCAAACGAG                         TTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTAAAAGTTATT
genomic: TTATTATTGGTCACTCTGAACGGAGGCAGCTTTTAAATGAATCAAATGAGgtacaaagtg ... tacttcctagTTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTAAAAGTTATT
EST: gi|208327440|gb|GE125420.1|GE125420
EST:     GGAGGCAGCTTTTAAATTGAATCAAATGAG                         TTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTAAAAGTTATT
genomic: GGAGGCAGCTTTTAAA-TGAATCAAATGAGgtacaaagtg ... tacttcctagTTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTAAAAGTTATT
EST: gi|192325300|gb|FK019156.1|FK019156
EST:     TTATTATTGGTCACTCTGAACGGAGGCAGCTTTTAAATGAATCAAATGAG                         TTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTAAAAGTTATT
genomic: TTATTATTGGTCACTCTGAACGGAGGCAGCTTTTAAATGAATCAAATGAGgtacaaagtg ... tacttcctagTTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTAAAAGTTATT
EST: gi|208277072|gb|GE080785.1|GE080785
EST:     TTATTATTGGTCACTCTGAACGGAGGCAGCTTTTAAATGAATCAAATGAG                         TTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTAAAAGTTATT
genomic: TTATTATTGGTCACTCTGAACGGAGGCAGCTTTTAAATGAATCAAATGAGgtacaaagtg ... tacttcctagTTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTAAAAGTTATT
EST: gi|9259762|gb|BE347909.1|BE347909
EST:     TTATTATTGGTCACTCTGAACGGAGGCAGCTTTTAAATGAATCAAACGAG                         TTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTAAAAGTTATT
genomic: TTATTATTGGTCACTCTGAACGGAGGCAGCTTTTAAATGAATCAAATGAGgtacaaagtg ... tacttcctagTTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTAAAAGTTATT
EST: gi|298165322|gb|HO011371.1|HO011371
EST:     TTATTATTGGTCACTCTGAACGGAGGCAGCTTTTAAATGAATCAAACGAG                         TTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTAAAAGTTATT
genomic: TTATTATTGGTCACTCTGAACGGAGGCAGCTTTTAAATGAATCAAATGAGgtacaaagtg ... tacttcctagTTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTAAAAGTTATT
EST: gi|209699025|gb|BW664305.1|BW664305
EST:     TTATTATTGGTCACTCTGAACGGAGGCAGCTTTTAAATGAATCAAATGAG                         TTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTAAAAGTTATT
genomic: TTATTATTGGTCACTCTGAACGGAGGCAGCTTTTAAATGAATCAAATGAGgtacaaagtg ... tacttcctagTTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTAAAAGTTATT
EST: gi|4396115|gb|AI495112.1|AI495112
EST:     TTATTATTGGTCACTCTGAACGGAGGCAGCTTTTAAATGAATCAAACGAG                         TTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTAAAAGTTATT
genomic: TTATTATTGGTCACTCTGAACGGAGGCAGCTTTTAAATGAATCAAATGAGgtacaaagtg ... tacttcctagTTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTAAAAGTTATT
EST: gi|16996754|gb|BM086126.1|BM086126
EST:     TTATTATTGGTCACTCTGAACGGAGGCAGCTTTTAAATGAATCAAACGAG                         TTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTAAAAGTTATT
genomic: TTATTATTGGTCACTCTGAACGGAGGCAGCTTTTAAATGAATCAAATGAGgtacaaagtg ... tacttcctagTTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTAAAAGTTATT
EST: gi|193355473|gb|FK323376.1|FK323376
EST:     TTATTATTGGTCACTCTGAACGGAGGCAGCTTTTAAATGAATCAAATGAG                         TTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTAAAAGTTATT
genomic: TTATTATTGGTCACTCTGAACGGAGGCAGCTTTTAAATGAATCAAATGAGgtacaaagtg ... tacttcctagTTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTAAAAGTTATT
EST: gi|193655751|gb|FK606239.1|FK606239
EST:     TTATTATTGGTCACTCTGAGCGGAGGCAGCTTTTAAATGAATCAAATGAG                         TTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTAAAAGTTATT
genomic: TTATTATTGGTCACTCTGAACGGAGGCAGCTTTTAAATGAATCAAATGAGgtacaaagtg ... tacttcctagTTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTAAAAGTTATT
EST: gi|207838682|gb|GD810400.1|GD810400
EST:     TTATTATTGGTCACTCTGAACGGAGGCAGCTTTTAAATGAATCAAATGAG                         TTTGTGGGAGATAAAGTTGCCTATGACACTTCAACAAGGT
genomic: TTATTATTGGTCACTCTGAACGGAGGCAGCTTTTAAATGAATCAAATGAGgtacaaagtg ... tacttcctagTTTGTGGGAGATAAAGTTGCCTATG-CACTTCAACAAGGT
EST: gi|7283679|gb|AW596283.1|AW596283
EST:     TTATTATTGGTCACTCTGAACGGAGGCAGCTTTTAAATGAATCAAATGAG                         TTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTAAAAGTTATT
genomic: TTATTATTGGTCACTCTGAACGGAGGCAGCTTTTAAATGAATCAAATGAGgtacaaagtg ... tacttcctagTTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTAAAAGTTATT
EST: gi|208209091|gb|GE007295.1|GE007295
EST:     TTATTATTGGTCACTCTGAACGGAGGCAGCTTTTAAATGAATCAAATGAG                         TTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTAAAAGTTATT
genomic: TTATTATTGGTCACTCTGAACGGAGGCAGCTTTTAAATGAATCAAATGAGgtacaaagtg ... tacttcctagTTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTAAAAGTTATT
EST: gi|209714152|gb|BW679481.1|BW679481
EST:     TTATTATTGGTCACTCTGAACGGAGGCAGCTTTTAAATGAATCAAATGAG                         TTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTAAAAGTTATT
genomic: TTATTATTGGTCACTCTGAACGGAGGCAGCTTTTAAATGAATCAAATGAGgtacaaagtg ... tacttcctagTTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTAAAAGTTATT
EST: gi|193623957|gb|FK572955.1|FK572955
EST:     TTATTATTGGTCACTCTGAGCGGAGGCAGCTTTTAAATGAATCAAATGAG                         TTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTAAAAGTTATT
genomic: TTATTATTGGTCACTCTGAACGGAGGCAGCTTTTAAATGAATCAAATGAGgtacaaagtg ... tacttcctagTTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTAAAAGTTATT
EST: gi|8282599|gb|BE020160.1|BE020160
EST:     TTATTATTGGTCACTCTGAACGGAGGCAGCTTTTAAATGAATCAAACGAG                         TTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTAAAAGTTATT
genomic: TTATTATTGGTCACTCTGAACGGAGGCAGCTTTTAAATGAATCAAATGAGgtacaaagtg ... tacttcctagTTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTAAAAGTTATT
EST: gi|207683771|gb|GD665074.1|GD665074
EST:     TTATTATTGGTCACTCTGAACGGAGGCAGCTTTTAAATGAATCAAATGAG                         TTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTAAAAGTTATT
genomic: TTATTATTGGTCACTCTGAACGGAGGCAGCTTTTAAATGAATCAAATGAGgtacaaagtg ... tacttcctagTTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTAAAAGTTATT
EST: gi|21637796|gb|BM107951.1|BM107951
EST:     TTATTATTGGTCACTCTGAACGGAGGCAGCTTTTAAATGAATCAAACGAG                         TTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTAAAAGTTATT
genomic: TTATTATTGGTCACTCTGAACGGAGGCAGCTTTTAAATGAATCAAATGAGgtacaaagtg ... tacttcctagTTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTAAAAGTTATT
EST: gi|207694903|gb|GD676650.1|GD676650
EST:     TTATTATTTGTCACTCTGAACGGAGGCAGCTTTTAAATGAATCAAATGAG                         TTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTAAAAGTTATT
genomic: TTATTATTGGTCACTCTGAACGGAGGCAGCTTTTAAATGAATCAAATGAGgtacaaagtg ... tacttcctagTTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTAAAAGTTATT
EST: gi|21677020|gb|BQ629371.1|BQ629371
EST:     TTATTATTGGTCACTCTGAACGGAGGCAGCTTTTAAATGAATCAAATGAG                         TTTGTGGGAGATAAAGTTGCCTATGCACTTCAACA
genomic: TTATTATTGGTCACTCTGAACGGAGGCAGCTTTTAAATGAATCAAATGAGgtacaaagtg ... tacttcctagTTTGTGGGAGATAAAGTTGCCTATGCACTTCAACA
EST: gi|298191900|gb|HO035982.1|HO035982
EST:     TTATTATTGGTCACTCTGAACGGAGGCAGCTTTTAAATGAATCAAACGAG                         TTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTAAAAGTTATT
genomic: TTATTATTGGTCACTCTGAACGGAGGCAGCTTTTAAATGAATCAAATGAGgtacaaagtg ... tacttcctagTTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTAAAAGTTATT
EST: gi|208310605|gb|GE104215.1|GE104215
EST:     TTATTATTGGTCACTCTGAACGGAGGCAGCTTTTAAATGAATCAAATGAG                         TTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTAAAAGTTATT
genomic: TTATTATTGGTCACTCTGAACGGAGGCAGCTTTTAAATGAATCAAATGAGgtacaaagtg ... tacttcctagTTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTAAAAGTTATT
EST: gi|208172200|gb|GD970651.1|GD970651
EST:     TTATTATTGGTCACTCTGAACGGAGGCAGCTTTTAAATGAATCAAATGAG                         TTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTAAAAGTTATT
genomic: TTATTATTGGTCACTCTGAACGGAGGCAGCTTTTAAATGAATCAAATGAGgtacaaagtg ... tacttcctagTTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTAAAAGTTATT
EST: gi|193719795|gb|FK652293.1|FK652293
EST:     TTATTATTGGTCACTCTGAACGGAGGCAGCTTTTAAATGAATCAAATGAG                         TTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTAAAAGTTATT
genomic: TTATTATTGGTCACTCTGAACGGAGGCAGCTTTTAAATGAATCAAATGAGgtacaaagtg ... tacttcctagTTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTAAAAGTTATT
EST: gi|193708698|gb|FK643774.1|FK643774
EST:     TAATTATTGGTCACTCTGAACGGAGGCAGCTTTTAAATGAATCAAATGAG                         TTTGTGGGANATAAAGTTGCCTATGCACTTCAACAAGGTCTAAAAGTTATT
genomic: TA-TTATTGGTCACTCTGAACGGAGGCAGCTTTTAAATGAATCAAATGAGgtacaaagtg ... tacttcctagTTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTAAAAGTTATT
EST: gi|193365671|gb|FK332808.1|FK332808
EST:     TTATTATTGGTCACTCTGAACGGAGGCAGCTTTTAAATGAATCAAATGAG                         TTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTAAAAGTTATT
genomic: TTATTATTGGTCACTCTGAACGGAGGCAGCTTTTAAATGAATCAAATGAGgtacaaagtg ... tacttcctagTTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTAAAAGTTATT
EST: gi|208163570|gb|GD963210.1|GD963210
EST:     TTATTATTGGTCACTCTGAACGGAGGCAGCTTTTAAATGAATCAAATGAG                         TTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTAAAGGTTATT
genomic: TTATTATTGGTCACTCTGAACGGAGGCAGCTTTTAAATGAATCAAATGAGgtacaaagtg ... tacttcctagTTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTAAAAGTTATT
EST: gi|7589997|gb|AW705759.1|AW705759
EST:     TTATTATTGGTCACTCTGAACGGAGGCAGCTTTTAAATGAATCAAACGAG                         TTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTAAAAGTTATT
genomic: TTATTATTGGTCACTCTGAACGGAGGCAGCTTTTAAATGAATCAAATGAGgtacaaagtg ... tacttcctagTTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTAAAAGTTATT
EST: gi|208188263|gb|GD982751.1|GD982751
EST:     TTATTATTGGTCACTCTGAACGGAGGCAGCTTTTAAATGAATCAAATGAG                         TTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTAAAAGTTATT
genomic: TTATTATTGGTCACTCTGAACGGAGGCAGCTTTTAAATGAATCAAATGAGgtacaaagtg ... tacttcctagTTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTAAAAGTTATT
EST: gi|207793408|gb|GD767526.1|GD767526
EST:     GGAGGCAGCTTTTAAATGAATCAAATGAG                         TTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTAAAAGTTATT
genomic: GGAGGCAGCTTTTAAATGAATCAAATGAGgtacaaagtg ... tacttcctagTTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTAAAAGTTATT
EST: gi|193435300|gb|FK400332.1|FK400332
EST:     TATTATTGGTCACTCTGAACGGAGGCAGCTTTTTAAATGAATCAGATGAG                         TTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTAAAAGTTATT
genomic: TATTATTGGTCACTCTGAACGGAGGCAGC-TTTTAAATGAATCAAATGAGgtacaaagtg ... tacttcctagTTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTAAAAGTTATT
EST: gi|9899377|gb|BE608345.1|BE608345
EST:     TTATTATTGGTCACTCTGAACGGAGGCAGCTTTTAAATGAATCAAACGAG                         TTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTAAAAGTTATT
genomic: TTATTATTGGTCACTCTGAACGGAGGCAGCTTTTAAATGAATCAAATGAGgtacaaagtg ... tacttcctagTTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTAAAAGTTATT
EST: gi|254316953|gb|GR828490.1|GR828490
EST:     TTATTATTGGTCACTCTGAACGGAGGCAGCTTTTAAATGAATCAAACGAG                         TTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTAAAAGTTATT
genomic: TTATTATTGGTCACTCTGAACGGAGGCAGCTTTTAAATGAATCAAATGAGgtacaaagtg ... tacttcctagTTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTAAAAGTTATT
EST: gi|193690323|gb|FK634578.1|FK634578
EST:     TATTATTGGTCACTCTGAGCGGAGGCAGCTTTTTAAATGAATCAAATGAG                         TTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTAAAAGTTATT
genomic: TATTATTGGTCACTCTGAACGGAGGCAGCTTTT-AAATGAATCAAATGAGgtacaaagtg ... tacttcctagTTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTAAAAGTTATT
EST: gi|207716097|gb|GD698467.1|GD698467
EST:     TTATTATTGGTCACTCTGAACGGAGGCAGCTTTTAAANGAATCAAATGAG                         TTTGTGGGAGATAAAGTTG
genomic: TTATTATTGGTCACTCTGAACGGAGGCAGCTTTTAAATGAATCAAATGAGgtacaaagtg ... tacttcctagTTTGTGGGAGATAAAGTTG
EST: gi|207706102|gb|GD688438.1|GD688438
EST:     TTATTATTGGTCACTCTGAACGGAGGCAGCTTTTAAATGAATCAAATGAG                         TTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGT
genomic: TTATTATTGGTCACTCTGAACGGAGGCAGCTTTTAAATGAATCAAATGAGgtacaaagtg ... tacttcctagTTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGT
EST: gi|24136837|gb|BU927347.1|BU927347
EST:     TTATTATTGGTCACTCTGAACGGAGGCAGCTTTTAAATGAATCAAACGAG                         TTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTAAAAGTTATT
genomic: TTATTATTGGTCACTCTGAACGGAGGCAGCTTTTAAATGAATCAAATGAGgtacaaagtg ... tacttcctagTTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTAAAAGTTATT
EST: gi|209700974|gb|BW664155.1|BW664155
EST:     TTATTATTGGTCACTCTGAACGGAGGCAGCTTTTAAATGAATCAAATGAG                         TTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTAAAAGTTATT
genomic: TTATTATTGGTCACTCTGAACGGAGGCAGCTTTTAAATGAATCAAATGAGgtacaaagtg ... tacttcctagTTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTAAAAGTTATT
EST: gi|193463111|gb|FK429556.1|FK429556
EST:     GAATCAAATGAG                         TTTGTGGGAGATTAAAGTTTGTCCTATGCACTTCAACAAGGTCTAAAAGTT
genomic: GAATCAAATGAGgtacaaagtg ... tacttcctagTTTGTGGGAGA-TAAAG-TTG-CCTATGCACTTCAACAAGGTCTAAAAGTT
EST: gi|18735501|gb|BM528799.1|BM528799
EST:     TTATTATTGGTCACTCTGAACGGAGGCAGCTTTTAAATGAATCAAACGAG                         TTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTAAAAGTTATT
genomic: TTATTATTGGTCACTCTGAACGGAGGCAGCTTTTAAATGAATCAAATGAGgtacaaagtg ... tacttcctagTTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTAAAAGTTATT
EST: gi|298170923|gb|HO015899.1|HO015899
EST:     TTATTATTGGTCACTCTGAACGGAGGCAGCTTTTAAATGAATCAAACGAG                         TTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTAAAAGTTATT
genomic: TTATTATTGGTCACTCTGAACGGAGGCAGCTTTTAAATGAATCAAATGAGgtacaaagtg ... tacttcctagTTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTAAAAGTTATT
EST: gi|213601422|gb|DB968724.1|DB968724
EST:     TTATTATTGGTCACTCTGAACGGAGGCAGCTTTTAAATGAATCAAATGAG                         TTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTAAAAGTTATT
genomic: TTATTATTGGTCACTCTGAACGGAGGCAGCTTTTAAATGAATCAAATGAGgtacaaagtg ... tacttcctagTTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTAAAAGTTATT
EST: gi|18735273|gb|BM528669.1|BM528669
EST:     TTATTATTGGTCACTCTGAACGGAGGCAGCTTTTAAATGAATCAAACGAG                         TTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTAAAAGTTATT
genomic: TTATTATTGGTCACTCTGAACGGAGGCAGCTTTTAAATGAATCAAATGAGgtacaaagtg ... tacttcctagTTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTAAAAGTTATT
EST: gi|207705982|gb|GD687828.1|GD687828
EST:     TTATTATTGGTCACTCTGAACGGAGGCAGCTTTTAAATGAATCAAATGAG                         TTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTAAAAGTTATT
genomic: TTATTATTGGTCACTCTGAACGGAGGCAGCTTTTAAATGAATCAAATGAGgtacaaagtg ... tacttcctagTTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTAAAAGTTATT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaagttgcttataatggcaaaaatcatatcatttactaaatgttttacttcctagTTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTAAAAGTTATTGCATGCATTGGGGAGACTCTCGAACAGCGTGAAGCTGGTACAACAACGG
                                 tactaaa  putative branch site (score: 1)
                                          ttttacttcct  putative PPT
                  aaaaatcatatcattt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtacaaagtgttcaattgcccttgctttatattcttttgttataaattctactttgtgaagttgcttataatggcaaaaatcatatcatttactaaatgttttacttcctagTTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTAAAAGTTATTGCATGCATTGGGGAGACTCTCGAACAGCGTGAAGCTGGTACAACAACGG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG