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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtacccacagcttacatttcactactctgattcaaaacatgtgtgaaactttgatatcttgtttttgccaatagaatttcttatgacaatttttgttgcctttagTTATCATGCCTCCCTCAGCCCTTGATCGCCTTG

Basic information

species Glycine max
transcript GLYMA15G04140.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209707768|gb|BW683660.1|BW683660
EST:     CCAGATCTGGAAAAGGGTGATAAAA                         TTATCATGCCTCCCTCAGCCCTTGATCGCCTTG
genomic: CCAGATCTGGAAAAGGGTGATAAAAgtatgtaccc ... ttgcctttagTTATCATGCCTCCCTCAGCCCTTGATCGCCTTG
EST: gi|298175906|gb|HO015311.1|HO015311
EST:     CCAGATCTGGAAAAGGGTGATAAAA                         TTATCATGCCTCCCTCAGCCCTTGATCGCCTTG
genomic: CCAGATCTGGAAAAGGGTGATAAAAgtatgtaccc ... ttgcctttagTTATCATGCCTCCCTCAGCCCTTGATCGCCTTG
EST: gi|37993996|gb|CF805742.1|CF805742
EST:     CCAGATCTGGAAAAGGGTGATAAAA                         TTATCATGCCTCCCTCAGCCCTTGATCGCCTTG
genomic: CCAGATCTGGAAAAGGGTGATAAAAgtatgtaccc ... ttgcctttagTTATCATGCCTCCCTCAGCCCTTGATCGCCTTG
EST: gi|16349341|gb|BI974936.1|BI974936
EST:     CCAGATCTGGAAAAGGGTGATAAAA                         TTATCATGCCTCCCTCAGCCCTTGATCGCCTTG
genomic: CCAGATCTGGAAAAGGGTGATAAAAgtatgtaccc ... ttgcctttagTTATCATGCCTCCCTCAGCCCTTGATCGCCTTG
EST: gi|120533678|gb|EH261811.1|EH261811
EST:     CCAGATCTGGAAAAGGGTGATAAAA                         TTATCATGCCTCCCTCAGCCCTTGATCGCCTTG
genomic: CCAGATCTGGAAAAGGGTGATAAAAgtatgtaccc ... ttgcctttagTTATCATGCCTCCCTCAGCCCTTGATCGCCTTG
EST: gi|15664016|gb|BI701387.1|BI701387
EST:     CCAGATCTGGAAAAGGGTGATAAAA                         TTATCATGCCTCCCTCAGCCCTTGATCGCCTTG
genomic: CCAGATCTGGAAAAGGGTGATAAAAgtatgtaccc ... ttgcctttagTTATCATGCCTCCCTCAGCCCTTGATCGCCTTG
EST: gi|213611480|gb|DB972797.1|DB972797
EST:     CCAGATCTGGAAAAGGGTGATAAAA                         TTATCATGCCTCCCTCAGCCCTTGATCGCCTTG
genomic: CCAGATCTGGAAAAGGGTGATAAAAgtatgtaccc ... ttgcctttagTTATCATGCCTCCCTCAGCCCTTGATCGCCTTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgatatcttgtttttgccaatagaatttcttatgacaatttttgttgcctttagTTATCATGCCTCCCTCAGCCCTTGATCGCCTTG
 ctttgat  putative branch site (score: 5)
                                       tttttgttgccttt  putative PPT
                   aatagaatttcttat  TA-rich tract