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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaccatactagtcactttataaatttttttatttggaataggttagcattttcatttattatttttcaaattggtacatgacagGTTAATGTTTTGAGCACTATAAAACATCCAAACATGGTTCAACTTCTAGGTGCCTGTCCAGAGTACGGATGCCTTGTATATGAGTACATTGAAAATGGTA

Basic information

species Glycine max
transcript GLYMA15G03100.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G03100.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv09s0002g01830.t01 (Vitis vinifera), 3'ss of exon 7
-----------------gtaaccat---actagtcactttataaatttttttatttggaataggttagcattttcatttattatttttcaaattggtacatgacagGTTAATGTTTTGAGCACTATAAAACATCCAAACATGGTTCAACTTCTAGGTGCCTGTCCAGAGTACGGATGCCTTGTATATGAGTACATTGAAAATGGTA
                 | |||  |    | | |    | | |  | |  ||||||  | |  ||||      | | |  | |||||||   |  ||   |  |||||| | ||  |||||   || | ||||||||| |||||||  ||| |||||||||| || ||||| ||||||||||| ||||| ||||| |||||||| |
gaccaaacttgatctgtggaacttttgagccacttgtctcacatgtgtgcttattt--attgagttaaacaactaact--tcatttttctgtt--gtgactttcagGTTGAGGTACTGAGCTGCATGAGACATCCAAATATGGTTCTCCTTGTAGGTGCCTGCCCTGAGTATGGATGCCTTGTGTATGAATACATGGAAAATGGCA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatttggaataggttagcattttcatttattatttttcaaattggtacatgacagGTTAATGTTTTGAGCACTATAAAACATCCAAACATGGTTCAACTTCTAGGTGCCTGTCCAGAGTACGGATGCCTTGTATATGAGTACATTGAAAATGGTA
             ttagcattttcattta  TA-rich tract