1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtttgatggttttccatgttttgtctaaaactttgaattgtttttcttttccttgagtgtcatctaaacattctttcatgcatgttgaaataattctttatttaaaacctgtgtgctagatgaagtcatcttgtgttagatagatagctaacagtttatatttttcgtgcatgaaatgcagATCTATGACATCTTCCAGCTACTGCCAGGTCAAATTCAGGTTGGAGTGTTCTCTGCTACAATGCCACCTGAGGCCCTGGAGATTACAAGGAAGTTCATGA
species | Glycine max |
transcript | GLYMA15G03020.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TTGTTTTGGATGAGGCTGATGAAATGCTTTCACGTGGTTTCAAGGACCAG ATCTATGACATCTTCCAGCTACTGCCAGGTCAAATTCAGGTTGGAGTGTTCEST: gi|151400940|gb|EV270754.1|EV270754
genomic: TTGTTTTGGATGAGGCTGATGAAATGCTTTCACGTGGTTTCAAGGACCAGgtttgatggt ... tgaaatgcagATCTATGACATCTTCCAGCTACTGCCAGGTCAAATTCAGGTTGGAGTGTTC
EST: TTGTTTTGGATGAG-CTGATGAAATGCTTTCACGTGGTTTCAAGGAC-AG ATCTATGACATCTTEST: gi|4286399|gb|AI441041.1|AI441041
genomic: TTGTTTTGGATGAGGCTGATGAAATGCTTTCACGTGGTTTCAAGGACCAGgtttgatggt ... tgaaatgcagATCTATGACATCTT
EST: TTGTTTTGGATGAGGCTGATGAAATGCTTTCACGTGGTTTAAAGGACCAG ATCTATGACATCTTCCAGCTACTGCCAGGTCAAATTCAGGTTGGAGTGTTCEST: gi|151393771|gb|EV263646.1|EV263646
genomic: TTGTTTTGGATGAGGCTGATGAAATGCTTTCACGTGGTTTCAAGGACCAGgtttgatggt ... tgaaatgcagATCTATGACATCTTCCAGCTACTGCCAGGTCAAATTCAGGTTGGAGTGTTC
EST: TTGTTTTGGATGAGGCTGATGAAATGCTTTCACGTGGTTTCAAGGACCAG ATCTATGACATCTTCCAGCTACTGCCAGGTCAAATTCACGTTGGAGTGTTC
genomic: TTGTTTTGGATGAGGCTGATGAAATGCTTTCACGTGGTTTCAAGGACCAGgtttgatggt ... tgaaatgcagATCTATGACATCTTCCAGCTACTGCCAGGTCAAATTCAGGTTGGAGTGTTC
catcttgtgttagatagatagctaacagtttatatttttcgtgcatgaaatgcagATCTATGACATCTTCCAGCTACTGCCAGGTCAAATTCAGGTTGGAGTGTTCTCTGCTACAATGCCACCTGAGGCCCTGGAGATTACAAGGAAGTTCATGA
agctaac putative branch site (score: 2)
taacagtttatatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgatggttttccatgttttgtctaaaactttgaattgtttttcttttccttgagtgtcatctaaacattctttcatgcatgttgaaataattctttatttaaaacctgtgtgctagatgaagtcatcttgtgttagatagatagctaacagtttatatttttcgtgcatgaaatgcagATCTATGACATCTTCCAGCTACTGCCAGGTCAAATTCAGGTTGGAGTGTTCTCTGCTACAATGCCACCTGAGGCCCTGGAGATTACAAGGAAGTTCATGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA