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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtctaatggttgactatattgttttaaagttatgaattgtaggttttgttatgatttgtgatcctgtaatgtggagaatgccacatcttttaatggaactttgataaatttctgaattttgttgcagGTTTGTTGCATTTGCTTAGCAAAATATGCAGATGATGACGAGCTTAGAGAGTTACCTTGCTCTCACTTTTTCCACGTAATGTGTGTTGACAAATGGTTAA

Basic information

species Glycine max
transcript GLYMA15G01570.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|51335723|gb|CO979589.1|CO979589
EST:     TTTTGGCTGCAGGGACAGAAAAGGAGCGAATGATTTCAGGAGAAGACGCT                         GTTTGTTGCATTTGCTTAGCAAAATATGCAGATGATGACGAGCTTAGAGAG
genomic: TTTTGGCTGCAGGGACAGAAAAGGAGCGAATGATTTCAGGAGAAGACGCTgtaagtctaa ... tttgttgcagGTTTGTTGCATTTGCTTAGCAAAATATGCAGATGATGACGAGCTTAGAGAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggagaatgccacatcttttaatggaactttgataaatttctgaattttgttgcagGTTTGTTGCATTTGCTTAGCAAAATATGCAGATGATGACGAGCTTAGAGAGTTACCTTGCTCTCACTTTTTCCACGTAATGTGTGTTGACAAATGGTTAA
                                            ttttgtt  CT-rich tract
                           tttgataaatttctga  TA-rich tract