1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...cttgtcgccaacttagaattttagttgataaaattaaatgacagctttgaacgggtgttttactgctcattggaactaattatttggtttttctttacagCTCGAAGTGGTCGGACCTGGTGGTGATCCTTATGGACATGGAGATCATGATCACCATTGATTGCATCCCGTAATTTTCCTTCAGAAATAAAATTTGCAAA
species | Glycine max |
transcript | GLYMA15G01360.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TGGAGAAAGGCAAGCCTAAAGAATGTCCAGTGTGCTCACAGTATTTTAAG CTCGAAGTGGTCGGACCTGGTGGTGATCCTTATGGACATGGAGATCATGATEST: gi|14259406|gb|BG882314.1|BG882314
genomic: TGGAGAAAGGCAAGCCTAAAGAATGTCCAGTGTGCTCACAGTATTTTAAGgtaagttgag ... ttctttacagCTCGAAGTGGTCGGACCTGGTGGTGATCCTTATGGACATGGAGATCATGAT
EST: TGGAGAAAGGCAAGCCTAAAGAATGTCCAGTGTGCTCACAGTATTTTAAG CTCGAAGTGGTCGGACCTGGTGGTGATCCTTATGGACATGGAGATCATGAT
genomic: TGGAGAAAGGCAAGCCTAAAGAATGTCCAGTGTGCTCACAGTATTTTAAGgtaagttgag ... ttctttacagCTCGAAGTGGTCGGACCTGGTGGTGATCCTTATGGACATGGAGATCATGAT
tttgaacgggtgttttactgctcattggaactaattatttggtttttctttacagCTCGAAGTGGTCGGACCTGGTGGTGATCCTTATGGACATGGAGATCATGATCACCATTGATTGCATCCCGTAATTTTCCTTCAGAAATAAAATTTGCAAA
aactaat putative branch site (score: 2)
tttggtttttcttt putative PPT
taattatttggttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttgtcgccaacttagaattttagttgataaaattaaatgacagctttgaacgggtgttttactgctcattggaactaattatttggtttttctttacagCTCGAAGTGGTCGGACCTGGTGGTGATCCTTATGGACATGGAGATCATGATCACCATTGATTGCATCCCGTAATTTTCCTTCAGAAATAAAATTTGCAAA
- - -cgccaac
- - - - - - - - - - - - - - - aaattaaa