1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...acctaattttaattaaatgtcacggtgactttcagacataaatgtgttttttagccacaagcacaaatttagcaatgtaatgagttgtggaattgtgcagGTGGTGTTTTACAAAAGAATAAACCGAGTATTCTTCATTGATGCAATTCCCAAGTCACCGTCAGGCAAAATCTTGCGCAAGGATCTAAGAGCAAAGCTAA
species | Glycine max |
transcript | GLYMA15G00390.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GTTATACCGACACAACCCAGGATGAAATTAAGCAGTTTATCTCCAAACAG GTGGTGTTTTACAAAAGAATAAACCGAGTATTCTTCATTGATGCAATTCCCEST: gi|21676239|gb|BQ628590.1|BQ628590
genomic: GTTATACCGACACAACCCAGGATGAAATTAAGCAGTTTATCTCCAAACAGgttatttccc ... aattgtgcagGTGGTGTTTTACAAAAGAATAAACCGAGTATTCTTCATTGATGCAATTCCC
EST: GTTATACCGACACAACCCAGGATGAAATTAAGCAGTTTATCTCCAAACAG GTGGTGTTTTACAAAAGAATAAACCGAGTATTCTTCATTGATGCAATTCCCEST: gi|16344305|gb|BI969900.1|BI969900
genomic: GTTATACCGACACAACCCAGGATGAAATTAAGCAGTTTATCTCCAAACAGgttatttccc ... aattgtgcagGTGGTGTTTTACAAAAGAATAAACCGAGTATTCTTCATTGATGCAATTCCC
EST: GTTATACCGACACAACCCAGGATGAAATTAAGCAGTTTATCTCCAAACAG GTGGTGTTTTACAAAAGAATAAACCGAGTATTCTTCATTGATGCAATTCCCEST: gi|21677461|gb|BQ629812.1|BQ629812
genomic: GTTATACCGACACAACCCAGGATGAAATTAAGCAGTTTATCTCCAAACAGgttatttccc ... aattgtgcagGTGGTGTTTTACAAAAGAATAAACCGAGTATTCTTCATTGATGCAATTCCC
EST: GTTATACCGACACAACCCAGGATGAAATTAAGCAGTTTATCTCCAAACAG GTGGTGTTTTACAAAAGAATAAACCGAGTATTCTTCATTGATGCAATTCCCEST: gi|193386153|gb|FK351207.1|FK351207
genomic: GTTATACCGACACAACCCAGGATGAAATTAAGCAGTTTATCTCCAAACAGgttatttccc ... aattgtgcagGTGGTGTTTTACAAAAGAATAAACCGAGTATTCTTCATTGATGCAATTCCC
EST: TATACCGACACAACCCAGGATGAAATTTAAGTCAGTTTATCTCCAAACAG GTGGTGTTTTACAAAAGAATAAACCGAGTATTCTTCATTGATGCAATTCCCEST: gi|7924309|gb|AW830335.1|AW830335
genomic: TATACCGACACAACCCAGGATGAAA-TTAAG-CAGTTTATCTCCAAACAGgttatttccc ... aattgtgcagGTGGTGTTTTACAAAAGAATAAACCGAGTATTCTTCATTGATGCAATTCCC
EST: GTTATACCGACACAACCCAGGATGAAATTAAGCAGTTTATCTCCAAACAG GTGGTGTTTTACAAAAGAATAAACCGAGTATTCTTCATTGATGCAATTCCC
genomic: GTTATACCGACACAACCCAGGATGAAATTAAGCAGTTTATCTCCAAACAGgttatttccc ... aattgtgcagGTGGTGTTTTACAAAAGAATAAACCGAGTATTCTTCATTGATGCAATTCCC
gttttttagccacaagcacaaatttagcaatgtaatgagttgtggaattgtgcagGTGGTGTTTTACAAAAGAATAAACCGAGTATTCTTCATTGATGCAATTCCCAAGTCACCGTCAGGCAAAATCTTGCGCAAGGATCTAAGAGCAAAGCTAA
acaaattta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acctaattttaattaaatgtcacggtgactttcagacataaatgtgttttttagccacaagcacaaatttagcaatgtaatgagttgtggaattgtgcagGTGGTGTTTTACAAAAGAATAAACCGAGTATTCTTCATTGATGCAATTCCCAAGTCACCGTCAGGCAAAATCTTGCGCAAGGATCTAAGAGCAAAGCTAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - -tgtcacg
- - - - - - - - - - - - gtgactt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -caagcac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caatgta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gttgtgg