1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ttgtagagtgttattatgtatagctctttcaagttattggaagtgtccattctccatgtttttacacttttgttcttttcgttgatggatgcaaagacagATATGTTGTAGATGCCGCTGATAGAGACAGTGTTCCAATATCTCGAAGTGAGTTACATGATCTATTGACAAAACCTTCTTTGAGTGGGATTCCTTTGCTT
species | Glycine max |
transcript | GLYMA14G39540.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GTCGGGGTGTCTCTGCTATCGT ATATGTTGTAGATGCCGCTGATAGAGACAATGTTCCAATATCTCGAAGTGAEST: gi|208331608|gb|GE132321.1|GE132321
genomic: GTCGTGGTGTCTCTGCTATTGTgtattgtctc ... gcaaagacagATATGTTGTAGATGCCGCTGATAGAGACAGTGTTCCAATATCTCGAAGTGA
EST: AGGTTCCGATCAATGTGGGAGCGATACTGTCGGGGTGTCTCTGCTATCGT ATATGTTGTAGATGCCGCTGATAGAGACAGTGTTCCAATATCTCGAAGTGA
genomic: AGGTTCCGGTCAATGTGGGAGCGATACTGTCGTGGTGTCTCTGCTATTGTgtattgtctc ... gcaaagacagATATGTTGTAGATGCCGCTGATAGAGACAGTGTTCCAATATCTCGAAGTGA
tccattctccatgtttttacacttttgttcttttcgttgatggatgcaaagacagATATGTTGTAGATGCCGCTGATAGAGACAGTGTTCCAATATCTCGAAGTGAGTTACATGATCTATTGACAAAACCTTCTTTGAGTGGGATTCCTTTGCTT
cgttgat putative branch site (score: 5)
atgttttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgtagagtgttattatgtatagctctttcaagttattggaagtgtccattctccatgtttttacacttttgttcttttcgttgatggatgcaaagacagATATGTTGTAGATGCCGCTGATAGAGACAGTGTTCCAATATCTCGAAGTGAGTTACATGATCTATTGACAAAACCTTCTTTGAGTGGGATTCCTTTGCTT
- - -gagtgtt
- - - - - - - - - - - - - - - - - - - - - - - -cattctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gttgatg