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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgattgtgtttcattacttacaataagctcttgaatttaacatattcaccttcattgttagagtacttatttttcaaatattttatttgtgttcatgcagCCATTTAAAGATATGATAGAAGGAATGAGACTGGATCTTAAGAAGCCAAGATACAAAAACTTTGATGAACTATATCTTTACTGTTACTATGTTGCTGGGA

Basic information

species Glycine max
transcript GLYMA14G39050.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G39050.1 (Glycine max), 3'ss of exon 4
lower sequence: AT5G17230.1 (Arabidopsis thaliana), 3'ss of exon 4
------------tgattgtgtttcattacttacaataagctcttgaatttaacat---attcaccttcattgttagagtacttatttttcaaatattttatttgtgttcatg---cagCCATTTAAAGATATGATAGAAGGAATGAGACTGGATCTTAAGAAGCCAAGATACAAAAACTTTGATGAACTATATCTTTACTGTTACTATGTTGCTGGGA
               |  | | | | | | |    | |   | ||| || |   |   |||||  | |||||  | |   |||||    |     | | || | | || |||   |||||||||  ||| ||||| |||||||||||| ||||  | |||||  | |||||| | ||||| ||||| ||||| |||||||| ||||| || ||||| |
gtcagccttgctctgtcttatcttacttcctcatttcattacatgagttaagagttgcattcag-tccattgcaataaaccttataaaactttggtctaatgtttatttatgttgcagCCATTTCGAGACATGATCGAAGGAATGAGAATGGACTTGAAGAAATCGAGATACCAGAACTTCGATGATCTATACCTTTACTGCTACTACGTCGCTGGAA

upper sequence: GLYMA14G39050.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv04s0079g00680.t01 (Vitis vinifera), 3'ss of exon 4
----tgattgtgtttcattacttacaataagctcttgaatttaacatattcaccttcattgttagagtacttatttttcaaatattttatttgtgttcatgcagCCATTTAAAGATATGATAGAAGGAATGAGACTGGATCTTAAGAAGCCAAGATACAAAAACTTTGATGAACTATATCTTTACTGTTACTATGTTGCTGGGA
    |  |  |||    | |||   |||     ||||| |  |  ||  |  ||||   | | |    |  |  | |  || |  |  || | |  |  |||||||||| ||||||||||| ||||| |||||  |||| ||||  ||| ||||||||| ||| || |||||||||||||| |||||||||||||| || || |
cttatcgtcatgtcatttgactgttaatc--tccttgagtcaacaattatggcctttgatttcatg--aactgctatctaattcatggatctattgttttgcagCCATTCAAAGATATGATTGAAGGTATGAGGATGGACCTTAGAAAGTCAAGATACAGAAATTTCGATGAACTATATCTGTACTGTTACTATGTGGCGGGAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207752987|gb|GD725525.1|GD725525
EST:     TTGATGCTGCTTTAGCAGATACAGTTGCCAAATTTCCTGTTGACATCCAG                         CCATTTAAAGATATGATAGAAGGAATGAGATTGGATCTTAAGAAGCCAAGA
genomic: TTGATGCTGCTTTATCAGATACAGTTGCCAAATTCCCTGTTGATATCCAGgtatggatcc ... gttcatgcagCCATTTAAAGATATGATAGAAGGAATGAGACTGGATCTTAAGAAGCCAAGA
EST: gi|192307398|gb|FK000754.1|FK000754
EST:     TTGATGCTGCTTTATCAGATACAGTTGCCAAATTCCCTGTTGATATCCAG                         CCATTTAAAGATATGATAGAAGGAATGAGACTGGATCTTAAGAAGCCAAGA
genomic: TTGATGCTGCTTTATCAGATACAGTTGCCAAATTCCCTGTTGATATCCAGgtatggatcc ... gttcatgcagCCATTTAAAGATATGATAGAAGGAATGAGACTGGATCTTAAGAAGCCAAGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcaccttcattgttagagtacttatttttcaaatattttatttgtgttcatgcagCCATTTAAAGATATGATAGAAGGAATGAGACTGGATCTTAAGAAGCCAAGATACAAAAACTTTGATGAACTATATCTTTACTGTTACTATGTTGCTGGGA
        attgttagagtactta  TA-rich tract