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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtagaaataagcttttttgcaactagtaaatattatcaatacattatatgatactatatttttattttatcttatgcgcatttttttttacttccatgatatgttgaattcaatatttaagtcatgacttataaatacccacttcatcaatttacatttagGTTCTACACCACGGAATATCCATAGGTTCTATTACGCTATGTCTGCTAAGTGGTCAAGTTCACATCTACATACTTATGGTTCTTTTCTCTGAGAGCACTA

Basic information

species Glycine max
transcript GLYMA14G38830.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31461715|gb|CD403743.1|CD403743
EST:     ATCTGGCGATGATTCTTTGGAATTTTCCAGCTTTAGGGGCTCTTGAATAT                         GTTCTACACCACGGGATATCCATAGGTTCTATTACGCTATGTCTGCTAAGT
genomic: ATCTGGCGATGATTCTTTGGAATTTTCCAGCTTTAGGGGGTCTTGAATATgtaagtagaa ... ttacatttagGTTCTACACCACGGAATATCCATAGGTTCTATTACGCTATGTCTGCTAAGT
EST: gi|213608608|gb|DB967111.1|DB967111
EST:     ATCTGGCGATGATTCTTTGGAATTTTCCAGCTTTAGGGGGTCTTGAATAT                         GTTCTACACCACGGAATATCCATAGGTTCTATTACGCTATGTCTGCTAAGT
genomic: ATCTGGCGATGATTCTTTGGAATTTTCCAGCTTTAGGGGGTCTTGAATATgtaagtagaa ... ttacatttagGTTCTACACCACGGAATATCCATAGGTTCTATTACGCTATGTCTGCTAAGT
EST: gi|209697846|gb|BW663928.1|BW663928
EST:     ATCTGGCGATGATTCTTTGGAATTTTCCAGCTTTAGGGGGTCTTGAATAT                         GTTCTACACCACGGAATATCCATAGGTTCTATTACGCTATGTCTGCTAAGT
genomic: ATCTGGCGATGATTCTTTGGAATTTTCCAGCTTTAGGGGGTCTTGAATATgtaagtagaa ... ttacatttagGTTCTACACCACGGAATATCCATAGGTTCTATTACGCTATGTCTGCTAAGT
EST: gi|209697845|gb|BW663929.1|BW663929
EST:     ATCTGGCGATGATTCTTTGGAATTTTCCAGCTTTAGGGGGTCTTGAATAT                         GTTCTACACCACGGAATATCCATAGGTTCTATTACGCTATGTCTGCTAAGT
genomic: ATCTGGCGATGATTCTTTGGAATTTTCCAGCTTTAGGGGGTCTTGAATATgtaagtagaa ... ttacatttagGTTCTACACCACGGAATATCCATAGGTTCTATTACGCTATGTCTGCTAAGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aattcaatatttaagtcatgacttataaatacccacttcatcaatttacatttagGTTCTACACCACGGAATATCCATAGGTTCTATTACGCTATGTCTGCTAAGTGGTCAAGTTCACATCTACATACTTATGGTTCTTTTCTCTGAGAGCACTA
                                       atcaatttacattta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaagtagaaataagcttttttgcaactagtaaatattatcaatacattatatgatactatatttttattttatcttatgcgcatttttttttacttccatgatatgttgaattcaatatttaagtcatgacttataaatacccacttcatcaatttacatttagGTTCTACACCACGGAATATCCATAGGTTCTATTACGCTATGTCTGCTAAGTGGTCAAGTTCACATCTACATACTTATGGTTCTTTTCTCTGAGAGCACTA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA