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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtgcttttttttttttacttggaagactacaacacattattattattataatatggttcaaatcaatgacttttaatttctttgtgatgtgcactccattttcagTTCTCAAGAAGCCCCGGAAAGGAAGGTTCTCACTTCAATCCCTACAGCAATCTGTTCCCACCCAGTGAGAGAAAGGGAATAGCAATATCAACACTGTGTT

Basic information

species Glycine max
transcript GLYMA14G37350.2
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G37350.2 (Glycine max), 3'ss of exon 4
lower sequence: Vv06s0004g06720.t01 (Vitis vinifera), 3'ss of exon 5
gtgagtgcttttttttttttacttggaagactacaacacattattattattataat--atggttcaaatcaatgacttttaatttctttgtgat-gtgcactccattttcagTTCTCAAGAAGCCCCGGAAAGGAAGGTTCTCACTTCAATCCCTACAGCAATCTGTTCCCACCCAGTGAGAGAAAGGGAATAGCAATATCAACACTGTGTT
                        |  ||| | |  | |  | |  ||| |   ||  |||  | | ||   | |   ||| | |       || |    ||    || ||||  |  |||||||| ||||||||||| || ||||||||||| |||||  || ||||||||  |||||| |||||||   |    |  |||||  | || |
------------------------gtgagaatgc--ccctctttcgttaatcagatccatgtcttatatacttaagaattattcttacaacaattggatgctttcattgcagTGGTATAGAAGCCCTGGAAAGGAAGGCTCCCACTTCAATCCTTACAGTGATATGTTCCCAATCAGTGAAAGAAAGGCCGTGCTCACTTCAACTGTATGCT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16348656|gb|BI974251.1|BI974251
EST:     TTGTTAGATTCACTGTGCCATTTCCATTGTTTGTGTATCCAATTTATTTG                         TTCTCA-GAAAGCCC-GGAAAG
genomic: TTGTTAGATTCACTGTGCCATTTCCATTGTTTGTGTATCCAATTTATTTGgtgagtgctt ... ccattttcagTTCTCAAGAA-GCCCCGGAAAG
EST: gi|17519247|gb|BM188289.1|BM188289
EST:     TTGTTAGATTCACTGTGCCATTTCCATTGTTTGTGTATCCAATTTATTTG                         TTCTCAAGAAGCCCCGGAAAGGAAGGTTCTCACTTCAATCCCTACAGCAAT
genomic: TTGTTAGATTCACTGTGCCATTTCCATTGTTTGTGTATCCAATTTATTTGgtgagtgctt ... ccattttcagTTCTCAAGAAGCCCCGGAAAGGAAGGTTCTCACTTCAATCCCTACAGCAAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atatggttcaaatcaatgacttttaatttctttgtgatgtgcactccattttcagTTCTCAAGAAGCCCCGGAAAGGAAGGTTCTCACTTCAATCCCTACAGCAATCTGTTCCCACCCAGTGAGAGAAAGGGAATAGCAATATCAACACTGTGTT
                    ttttaat  putative branch site (score: 3)
                                           ctccattttc  putative PPT
              aatgacttttaattt  TA-rich tract